Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031902.1 Length=125114 Score E Sequences producing significant alignments: (Bits) Value seq87 158 1e-33 seq253 116 3e-21 >seq87 Length=489008 Score = 158 bits (174), Expect = 1e-33 Identities = 426/647 (66%), Gaps = 5/647 (1%) Strand=Plus/Minus Query 52336 GTTACACCGTAAATGGATATGCAATAGCAGGATGGTGTTCATAGCCACGAACAGTAAAAT 52395 |||| ||||||||||| ||| ||| || |||| || ||| || || || ||||| Sbjct 413669 GTTATACCGTAAATGGGTATTTAATCGCTTCATGGCATTGATAACCTTCAAGAGAAAAAT 413610 Query 52396 CATCCTTACTTACCCACGTTAATACATCATCCAAAGTTCTAATATTTGGATTGATTTCTA 52455 |||| | ||||||| ||| | ||| || || ||| |||| | || || || || Sbjct 413609 CATCAGTGGTTACCCATGTTTCCAGATCTTCTAACGTTTTAATTTGAGGGTTTATCGTTA 413550 Query 52456 AAGTAGGAGGTGCAAAAGGTTCACGATCGAATTGCTTGTGCTCCATCAGAACATTATACT 52515 | | || |||||||| || || | || || | |||||| || | | Sbjct 413549 ATGATGGTAAAGCAAAAGGCTCGCGTTTTAACTGAACATCGCGCATCAGTGG--TA-ATT 413493 Query 52516 GATCTTCATAGATATGAAGATTAATAATCTTTTGACGAGCAATACCTGGCTTAAGACCTG 52575 | | |||||| ||||| ||| | ||| || ||| || |||| || | | |||| | Sbjct 413492 GGTTTTCATAAATATGTGCATTCACAATTTTATGATACGCCTTACCCGGTTGATGACCCG 413433 Query 52576 TAATCTGTGCCATAATAGCTAGAAGTGCATAGCATTGCACCATATTAAATACTTGGCCCA 52635 ||||| | ||||| | ||| || | | | ||||| || ||||| || | Sbjct 413432 TAATCCGCGCCATCAAAGCGAGTAACACGAAACATTGTACTTGGTTAAAATTCAATCCAA 413373 Query 52636 GCAAGAAATCATTAGACCTCTGGAAAGAGTTTAGGTATAGTGTATCACCTAAAATAGAGA 52695 | | ||| | | || | ||| ||| || || |||||||| | | || | Sbjct 413372 GTGGTACATCGCAACTACGTTGATAGGAGGTTAAGTGCAGAGTATCACCGAGCAGTGAAA 413313 Query 52696 ATTGATGGGTATGCATACACGGACGTAGGCATCCTTTACGAAATTCCCCAGGGTTCCAAA 52755 | ||| ||||||||||| || |||| |||||| | |||||| || || || ||| Sbjct 413312 AAGTATGAGTATGCATACAAGGCCGTAAGCATCCCATTTCAAATTCACCTGGATTATAAA 413253 Query 52756 AAGTTAAAATTTCTCCACGATCGTCAATCCCTCTTTTCAAATTATGATAGACTTTGGCTA 52815 | || | ||||| | || || ||||| || |||| || |||| | ||||| | Sbjct 413252 ACGTAATGATTTCAGCGCGGTCATCAATACCATTTTTTAAGTTATTAACCACTTTTTTAA 413193 Query 52816 ACTGATCAAATACCATACCATCAGAATTAGTCCAATGA-CGTCCTTGAACACCATAGACT 52874 |||||| | | ||||||||| ||| ||| || ||||| |||||||| || Sbjct 413192 GCTGATCGAGATGCGTACCATCAGGCCGCTGCCA-TGAGCGCCCTTGGACACCATAAACG 413134 Query 52875 CGTCCCATATCATCCTCGCCTTTACGGAATGGATTACCTAGCCAGGCAATATTTTCATTT 52934 || ||||||||||| || ||||||||| ||| ||| ||||| || ||| ||||| Sbjct 413133 CGCCCCATATCATCTTCACCTTTACGGTGTGGGTTATTCAGCCAAGCTTGATTGTCATTC 413074 Query 52935 GCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGC 52981 ||||| ||||||||||||||| || || | |||||||| ||||| Sbjct 413073 GCATTTGCATTCCATGTATTACAGCCGATTTCACGGAATTGAGCTGC 413027 >seq253 Length=360942 Score = 116 bits (128), Expect = 3e-21 Identities = 323/485 (67%), Gaps = 19/485 (4%) Strand=Plus/Minus Query 59314 ACTGAGAAAGAAGTTTACGATGCCTGTCAGGGCCTGGAGTATGAAATCAATACGATGTTC 59373 || || |||||| ||||||||||| || ||| || || ||| | || || || Sbjct 105319 ACCGAAAAAGAATGTTACGATGCCTTCCAATCCCTTGAATACGAAGTGAACACACTGCAT 105260 Query 59374 AACTCTAATGGTCAAAGTCCGTTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGAA 59433 | | | |||||||||| || || | |||||||| |||||| |||| || || ||| Sbjct 105259 ACCGCCAATGGTCAAACCCCCTTCGTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAA 105200 Query 59434 GCACGTCTTG-TACAGAAAGCAATACTAGAAGTACGTATGGATGGTTTGGGTATCAA--- 59489 ||||| |||| | || || | || ||| || ||||| | ||| || |||| || Sbjct 105199 GCACG-CTTGATCCAACAATCCATTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCG 105141 Query 59490 TAAACGTACAGCTATCTTCCCTAAACTGGTATTTG-TTTTGCGTGAGGGCGTAAACATGA 59548 |||| || || | ||||||||| | || |||| | || ||| | ||| || Sbjct 105140 TAAA---ACTGCCGTTTTCCCTAAATTAGTGTTTGCTATTAAAAAAGGCCTTAATCA-CC 105085 Query 59549 AACCTGGTGATGTTAACTATGATATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTA 59608 || ||||||| ||||||||||||||| ||||||| | | ||| | |||| | Sbjct 105084 AATATGGTGATCCTAACTATGATATCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCA 105025 Query 59609 TGTATCCTGACTACATCAGTTATGATAAGGTTGTAGAAGTTACGGGGGACTACAAAGTCT 59668 ||||||| ||| | | | ||||| || ||||| || || ||||| | ||| Sbjct 105024 TGTATCCCGACATCTTAAACTATGACAAAGTTGTCGATGTAACGGGCTCGTTTAAAACGC 104965 Query 59669 CTATGGGCTGTCGTTCATTCCTGGCTG-CTGCG--GAAGATGGTGA--AACTTC----TG 59719 | |||||||| || ||| | | || || || ||| |||| | || ||| || Sbjct 104964 CAATGGGCTGCCGCAGCTTCTTAGGTGTCTACGAAGAAAATGGCCAACAAATTCATGATG 104905 Query 59720 GTCGTAACAACTTAGGCGTTGTTTCCGTAAACCTTCCTCGAATCGCTATCGAAGCGGAAG 59779 | ||||| || ||||| || || | | ||||| || || || || || |||||| ||| Sbjct 104904 GCCGTAATAATTTAGGTGTCATTAGCCTTAACCTGCCGCGTATTGCCATTGAAGCGCAAG 104845 Query 59780 GAAAT 59784 | ||| Sbjct 104844 GCAAT 104840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400231644114475