Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq87 158 9e-34 seq253 116 3e-21 >seq87 Length=489008 Score = 158 bits (174), Expect = 9e-34 Identities = 426/647 (66%), Gaps = 5/647 (1%) Strand=Plus/Minus Query 51447 GTTACACCGTAAATGGATATGCAATAGCAGGATGGTGTTCATAGCCACGAACAGTAAAAT 51506 |||| ||||||||||| ||| ||| || |||| || ||| || || || ||||| Sbjct 413669 GTTATACCGTAAATGGGTATTTAATCGCTTCATGGCATTGATAACCTTCAAGAGAAAAAT 413610 Query 51507 CATCCTTACTTACCCACGTTAATACATCATCCAAAGTTCTAATATTTGGATTGATTTCTA 51566 |||| | ||||||| ||| | ||| || || ||| |||| | || || || || Sbjct 413609 CATCAGTGGTTACCCATGTTTCCAGATCTTCTAACGTTTTAATTTGAGGGTTTATCGTTA 413550 Query 51567 AAGTAGGAGGTGCAAAAGGTTCACGATCGAATTGCTTGTGCTCCATCAGAACATTATACT 51626 | | || |||||||| || || | || || | |||||| || | | Sbjct 413549 ATGATGGTAAAGCAAAAGGCTCGCGTTTTAACTGAACATCGCGCATCAGTGG--TA-ATT 413493 Query 51627 GATCTTCATAGATATGAAGATTAATAATCTTTTGACGAGCAATACCTGGCTTAAGACCTG 51686 | | |||||| ||||| ||| | ||| || ||| || |||| || | | |||| | Sbjct 413492 GGTTTTCATAAATATGTGCATTCACAATTTTATGATACGCCTTACCCGGTTGATGACCCG 413433 Query 51687 TAATCTGTGCCATAATAGCTAGAAGTGCATAGCATTGCACCATATTAAATACTTGGCCCA 51746 ||||| | ||||| | ||| || | | | ||||| || ||||| || | Sbjct 413432 TAATCCGCGCCATCAAAGCGAGTAACACGAAACATTGTACTTGGTTAAAATTCAATCCAA 413373 Query 51747 GCAAGAAATCATTAGACCTCTGGAAAGAGTTTAGGTATAGTGTATCACCTAAAATAGAGA 51806 | | ||| | | || | ||| ||| || || |||||||| | | || | Sbjct 413372 GTGGTACATCGCAACTACGTTGATAGGAGGTTAAGTGCAGAGTATCACCGAGCAGTGAAA 413313 Query 51807 ATTGATGGGTATGCATACACGGACGTAGGCATCCTTTACGAAATTCCCCAGGGTTCCAAA 51866 | ||| ||||||||||| || |||| |||||| | |||||| || || || ||| Sbjct 413312 AAGTATGAGTATGCATACAAGGCCGTAAGCATCCCATTTCAAATTCACCTGGATTATAAA 413253 Query 51867 AAGTTAAAATTTCTCCACGATCGTCAATCCCTCTTTTCAAATTATGATAGACTTTGGCTA 51926 | || | ||||| | || || ||||| || |||| || |||| | ||||| | Sbjct 413252 ACGTAATGATTTCAGCGCGGTCATCAATACCATTTTTTAAGTTATTAACCACTTTTTTAA 413193 Query 51927 ACTGATCAAATACCATACCATCAGAATTAGTCCAATGA-CGTCCTTGAACACCATAGACT 51985 |||||| | | ||||||||| ||| ||| || ||||| |||||||| || Sbjct 413192 GCTGATCGAGATGCGTACCATCAGGCCGCTGCCA-TGAGCGCCCTTGGACACCATAAACG 413134 Query 51986 CGTCCCATATCATCCTCGCCTTTACGGAATGGATTACCTAGCCAGGCAATATTTTCATTT 52045 || ||||||||||| || ||||||||| ||| ||| ||||| || ||| ||||| Sbjct 413133 CGCCCCATATCATCTTCACCTTTACGGTGTGGGTTATTCAGCCAAGCTTGATTGTCATTC 413074 Query 52046 GCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGC 52092 ||||| ||||||||||||||| || || | |||||||| ||||| Sbjct 413073 GCATTTGCATTCCATGTATTACAGCCGATTTCACGGAATTGAGCTGC 413027 >seq253 Length=360942 Score = 116 bits (128), Expect = 3e-21 Identities = 323/485 (67%), Gaps = 19/485 (4%) Strand=Plus/Minus Query 58425 ACTGAGAAAGAAGTTTACGATGCCTGTCAGGGCCTGGAGTATGAAATCAATACGATGTTC 58484 || || |||||| ||||||||||| || ||| || || ||| | || || || Sbjct 105319 ACCGAAAAAGAATGTTACGATGCCTTCCAATCCCTTGAATACGAAGTGAACACACTGCAT 105260 Query 58485 AACTCTAATGGTCAAAGTCCGTTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGAA 58544 | | | |||||||||| || || | |||||||| |||||| |||| || || ||| Sbjct 105259 ACCGCCAATGGTCAAACCCCCTTCGTAACCTTTGGGTTTGGTTTAGGCACATCGCAAGAA 105200 Query 58545 GCACGTCTTG-TACAGAAAGCAATACTAGAAGTACGTATGGATGGTTTGGGTATCAA--- 58600 ||||| |||| | || || | || ||| || ||||| | ||| || |||| || Sbjct 105199 GCACG-CTTGATCCAACAATCCATTCTAAAAAACCGTATCGCTGGGTTAGGTAAAAATCG 105141 Query 58601 TAAACGTACAGCTATCTTCCCTAAACTGGTATTTG-TTTTGCGTGAGGGCGTAAACATGA 58659 |||| || || | ||||||||| | || |||| | || ||| | ||| || Sbjct 105140 TAAA---ACTGCCGTTTTCCCTAAATTAGTGTTTGCTATTAAAAAAGGCCTTAATCA-CC 105085 Query 58660 AACCTGGTGATGTTAACTATGATATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTA 58719 || ||||||| ||||||||||||||| ||||||| | | ||| | |||| | Sbjct 105084 AATATGGTGATCCTAACTATGATATCAAACAGTTAGCATTAGAGTGTGCGAGCAAACGCA 105025 Query 58720 TGTATCCTGACTACATCAGTTATGATAAGGTTGTAGAAGTTACGGGGGACTACAAAGTCT 58779 ||||||| ||| | | | ||||| || ||||| || || ||||| | ||| Sbjct 105024 TGTATCCCGACATCTTAAACTATGACAAAGTTGTCGATGTAACGGGCTCGTTTAAAACGC 104965 Query 58780 CTATGGGCTGTCGTTCATTCCTGGCTG-CTGCG--GAAGATGGTGA--AACTTC----TG 58830 | |||||||| || ||| | | || || || ||| |||| | || ||| || Sbjct 104964 CAATGGGCTGCCGCAGCTTCTTAGGTGTCTACGAAGAAAATGGCCAACAAATTCATGATG 104905 Query 58831 GTCGTAACAACTTAGGCGTTGTTTCCGTAAACCTTCCTCGAATCGCTATCGAAGCGGAAG 58890 | ||||| || ||||| || || | | ||||| || || || || || |||||| ||| Sbjct 104904 GCCGTAATAATTTAGGTGTCATTAGCCTTAACCTGCCGCGTATTGCCATTGAAGCGCAAG 104845 Query 58891 GAAAT 58895 | ||| Sbjct 104844 GCAAT 104840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 365243574582213