Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq964 116 3e-21 seq1304 96.9 2e-15 >seq964 Length=291957 Score = 116 bits (128), Expect = 3e-21 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186 ||||| || || ||| |||||||||||||||||| || | | || | || | || | Sbjct 217092 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTA-CGACCATCTT 217034 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||| || || ||||| ||||||||||| |||||||||| || | ||||||||| ||| Sbjct 217033 CCAGTTGTTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCT 216974 Query 44247 TTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || ||| | |||| | ||||| |||| | ||| || |||| || || || Sbjct 216973 GGATTTTAGCCTTTAC-GTTCTCAATGGTATCGGAAGGTTCGACTTCCAAAGTGATGGTT 216915 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||| || |||||||||||||| Sbjct 216914 TTGCCGGTCAAGGTTTTAACGAAGATTTGCAT 216883 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| |||||||||||||| | || ||| | || |||| || || ||||||||| Sbjct 216845 TCCTTCTGGATGTTGTAATCCGAAAGGGTGCGTCCATCTTCCAATTGTTTACCGGCAAAG 216786 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || || |||| || | ||||||||| || ||||| ||| | || Sbjct 216785 ATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCCTTGACGTTT 216726 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| |||| | ||| || |||| || || || ||||| || | || |||||| Sbjct 216725 TCAATGGTATCGGAAGGTTCAACTTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACG 216666 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 216665 AAGATCTGCAT 216655 Score = 98.7 bits (108), Expect = 7e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| |||||| || || ||||| ||||| || Sbjct 215873 TTGCATACCACCACGCAAACGCAATACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATA 215814 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| | ||| | || |||| ||| || || || || ||||||||||| ||||| Sbjct 215813 ATCGGATAAAGTGCGGCCATCTTCCAACTGTTTACCAGCGAAAATCAAACGCTGTTGATC 215754 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGG 44282 || || | |||||| || || || || |||| || || |||| || || | | Sbjct 215753 TGGGGGAATACCTTCTTTGTCTTGGAT-TTTAGCTTTAACATTTTCTATAGTATCCGAAG 215695 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||||| ||||| || || ||||| | || || ||||| ||||||||| Sbjct 215694 GTTCAACCTCCAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 215639 >seq1304 Length=336898 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||||||||||| |||| | || | ||| | || |||| || || || || || Sbjct 274209 TCCTTTTGGATGTTGTAGTCGGACAAGGT-GCGACCATCTTCCAATTGTTTACCAGCGAA 274267 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||| || ||||||| || | |||||| || || || || ||| | | Sbjct 274268 GATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATT 274327 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| | || || |||| ||||| ||||| || || | || || || Sbjct 274328 TTCAATGGTGTCGGAAGGCTCAACTTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTGAC 274387 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 274388 GAAGATCTGCAT 274399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982884412921