Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq767 152 7e-32 seq1303 134 2e-26 >seq767 Length=1660825 Score = 152 bits (168), Expect = 7e-32 Identities = 280/412 (68%), Gaps = 20/412 (5%) Strand=Plus/Plus Query 155730 CGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAA 155789 ||| ||| || || || ||||| || |||||||| |||||||| ||||| || || | Sbjct 519658 CGATTCATGGCTGTAGACTGAGCAGCACGTACCAAACCTTCCAACTCAGCTCCACTAAAG 519717 Query 155790 TTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGAT 155849 |||||||| | | || || | || | ||||| |||| || | | | ||| | Sbjct 519718 TTTTTAGTAAGAGCAGCAATCTCTTTGCAATCTACATCGGGGGCGATTTTATTG----AA 519773 Query 155850 TTCATTTTAGCAAC----GTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAA 155905 |||| || ||| | ||||||||||| | ||| |||| ||||| |||||| Sbjct 519774 TTCACGCATGCGCTTGGTGTGAATATTTAAAATTTGCACACGACCCTGTTCATTGGGTAA 519833 Query 155906 TCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTC 155965 | |||||| || | | |||||| || || || | ||||| || || ||||| | || Sbjct 519834 ACTAATTTCCATTTGTACTTCCAAACGACCGGGACGCAATAAGGCGTCATCAATCATATC 519893 Query 155966 GGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTT 156025 | | || |||||||| || | ||||||||| ||||| ||| ||||| || ||||| Sbjct 519894 ACGACGATTAGTCATACCAATAACTAAAATGTTATTTAATTGTTCAACACCATCGATTTT 519953 Query 156026 AGACAATAATTGATTGACTACGGCGTCGTGCGTGGCGTTATCACCG------------CG 156073 | ||| |||||||| || || | ||||| | ||| |||| || Sbjct 519954 GGCCAACAATTGATTTACCACAGTATCGTGGACACCACTATTACCGGCCACAGAACCACG 520013 Query 156074 TTTTTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCCGCTG 156125 || |||||| | ||||| |||||||| |||| ||||| ||| || |||||| Sbjct 520014 TTGTTTACAAATGGCATCGATTTCATCAAAGATGATAATGTGCAAACCGCTG 520065 Score = 95.1 bits (104), Expect = 2e-14 Identities = 196/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 |||||| || | | ||| ||||| ||||||||||||||||| | || | | ||||| Sbjct 520169 AAACAAACGACGAATGTTGGCTTCTGATTCACCCACATATTTATCCAAAATCTGTGGACC 520228 Query 156224 GTTAACTATTTTGACGGGTCG-TG--ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAA 156280 ||||| || || || || || |||||| | ||| | || |||||||| || Sbjct 520229 ATTAACAATCTTA--GGCTCTCTGGCATTTAACATATTGC-CAATTTGACGAGCCATCAA 520285 Query 156281 TGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAA 156340 |||||||| || || || || ||||| || | || |||| || || || || || Sbjct 520286 AGTTTTACCAGTACCGGGTGGACCATATAATAAAATACCCTTTACGTGCTTGCAGCCCAA 520345 Query 156341 TTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGA 156400 | ||| | ||| |||| || |||||||||||||||| ||| ||| | Sbjct 520346 CTGTTCTACCAACTCTGGTGGAAAGACTCGAGAAGCAAATGCTCTTCTAAAGATGGCATT 520405 Query 156401 AAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 ||||| |||||||| || || | |||||||| | |||| ||||| Sbjct 520406 GAATTCCTTATCCAAACCGCCAATACCCATTTTACCGAAATCCCAAT 520452 >seq1303 Length=344040 Score = 134 bits (148), Expect = 2e-26 Identities = 284/424 (67%), Gaps = 0/424 (0%) Strand=Plus/Minus Query 50475 GGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT 50534 || ||||| || ||||| || ||||| |||||| | |||||||| || || | | Sbjct 96261 GGTGATTTGGGTCCTGTGTATGGTTTCCAATGGCGTCATTTTGGTGCCAAATATCGCACT 96202 Query 50535 TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTTG 50594 ||| ||| ||||| | | || |||||||| ||| | | | || | || | Sbjct 96201 TGCCACGATGATTACTCCAATGAGGGTGTGGATCAGCTGAAGGAGGTCATCAATACAATA 96142 Query 50595 AAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGAT 50654 || || ||| | ||||| |||||| | ||| | ||||||||||| ||||||| Sbjct 96141 CGTACTAATCCCAATGATCGACGTATTATTATGTCAGCCTGGAATCCTCTCGATATACCA 96082 Query 50655 CAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACAATGTTTTA 50714 |||| | ||| || || |||||| ||| ||||| |||| || | || || Sbjct 96081 CAAATGGCTTTGCCGCCCTGTCATTGTTTGGCACAATTCTATGTGGCAAATGGTGAACTA 96022 Query 50715 TCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCT 50774 || || || | || ||| | ||||| |||||| | || || || || || ||||| Sbjct 96021 TCATGCCAGTTGTACCAACGCAGCGCTGACATGGGTCTGGGTGTACCATTTAATATAGCT 95962 Query 50775 TCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAATTT 50834 || || |||||| |||| ||| |||| ||||| || | ||||||| ||||| ||| Sbjct 95961 TCATATGCTTTACTAACATATATGATTGCTCATATTACCGGTTTGAAACCAGGAGATTTT 95902 Query 50835 ATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAGGAGCAA 50894 |||||||| || || ||||| |||| |||| | || |||| ||||| ||| Sbjct 95901 ATTCATACCACTGGTGATACTCATGTTTATAAGAATCATATTGAACCTTTGAAGGAACAA 95842 Query 50895 TTGA 50898 |||| Sbjct 95841 TTGA 95838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667060916252280