Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq964 138 3e-27 seq1190 136 1e-26 seq1304 111 4e-19 >seq964 Length=291957 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||| | || |||||||| ||||| | || || ||| || || Sbjct 216658 CAGATCTTCGTGAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTTGAACCTTCCGAT 216717 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || || || ||||| || || || ||||| ||| Sbjct 216718 ACCATTGAAAACGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAACAA 216777 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| ||||| | ||||||||| | || ||| | ||||| ||| || Sbjct 216778 CGTTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGCACCCTTTCGGATTACAACATC 216837 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || ||||| || || ||| | || ||| | ||| Sbjct 216838 CAGAAGGAATCTACTCTCCATTTAGTATTGCGTCTC 216873 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || ||||| || || | ||||| ||| || || Sbjct 215643 CAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTGGAGGTTGAACCTTCGGAT 215702 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || ||||||||||| || || || || || || Sbjct 215703 ACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAACAG 215762 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||| | |||||||| | ||| | ||||||||||| | Sbjct 215763 CGTTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGCACTTTATCCGATTATAACATT 215822 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 215823 CAAAAAGAATCTACCCTTCA-CTTG 215846 Score = 118 bits (130), Expect = 3e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| ||||| | || || ||| || || Sbjct 216886 CAAATCTTCGTTAAAACCTTGACCGGCAAAACCATCACTTTGGAAGTCGAACCTTCCGAT 216945 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || || || ||||| || ||||| || || || || |||||| Sbjct 216946 ACCATTGAGAACGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAGCAA 217005 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| ||||| || |||||||| | || |||| | || || ||| | Sbjct 217006 CGTTTGATCTTCGCCGGTAAACAACTGGAAGATGGTCGTAC-CTTGTCTGACTACAACAT 217064 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||| || || || || ||| Sbjct 217065 CCAAAAGGAGTCCACCCTCCAT 217086 Score = 116 bits (128), Expect = 9e-21 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| |||||||| ||| | || || || || |||||||| ||||| ||| Sbjct 215181 AAAATGC---AAATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCCTTGAGGTCGAA 215237 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || || || ||||| || || || || || || || Sbjct 215238 CCTTCGGATACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCA 215297 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| || || || ||||| ||||| | ||||| ||| | ||| | ||||| Sbjct 215298 GATCAACAACGTCTAATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGAT 215357 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| | ||||||||||| || || || |||| || Sbjct 215358 TATAATATTCAAAAAGAATCTACTCTCCA-CTTGGTT 215393 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| ||||| | || || || || || Sbjct 215415 CAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAAGTTGAGCCTTCTGAT 215474 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| ||||||||||||||||| || || || ||| Sbjct 215475 ACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAACAA 215534 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||| || | || | | |||||||| | Sbjct 215535 CGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAATATA 215594 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||| ||| ||||| | || || Sbjct 215595 CAAAAAGAATCTACATTGCATTTGGTATT 215623 >seq1190 Length=275307 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || || || || ||||| || ||||| || || ||| Sbjct 186676 CAGATTTTTGTCAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCGTCCGAC 186735 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||||||||||||||||||||| || || || || ||| Sbjct 186736 ACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAACAA 186795 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| | |||||||| | ||||| | ||||| || | Sbjct 186796 CGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGCCGTACTCTCTCTGATTACAATATT 186855 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || |||| |||| Sbjct 186856 CAAAAAGAATCCACTTTGCA-CTTG 186879 >seq1304 Length=336898 Score = 111 bits (122), Expect = 4e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||| | || || || || || ||| | || || || || ||| Sbjct 274396 CAGATCTTCGTCAAAACTTTAACTGGTAAGACCATTACCTTGGAAGTTGAGCCTTCCGAC 274337 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || || || ||||||||||| ||||| || || || ||| Sbjct 274336 ACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAACAA 274277 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| || ||||| | |||||||| | || |||| |||| || ||| | Sbjct 274276 CGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCAC-CTTGTCCGACTACAACAT 274218 Query 178103 CCAAAAAGAATCAAC 178117 |||||| ||||| || Sbjct 274217 CCAAAAGGAATCCAC 274203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203704780733322