Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq8915 91.5 1e-13 >seq8915 Length=10834 Score = 91.5 bits (100), Expect = 1e-13 Identities = 236/359 (66%), Gaps = 13/359 (4%) Strand=Plus/Minus Query 19002 CAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATG 19061 || || || || || || |||||| |||| || || | || || | | || ||| Sbjct 9317 CAATTCTATGTGGCCAATGGTGAACTATCATGTCAGTTGTATCAACGCAGTGCTGACATG 9258 Query 19062 GGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCAT 19121 || ||||| || || || || || ||| |||||| | || || || || | || ||| Sbjct 9257 GGTCTTGGAGTGCCATTTAATATAGCTTCATATGCTTTACTAACATATATGATTGCTCAT 9198 Query 19122 GTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTG 19181 |||| || | ||| | |||||||| |||||||| | || ||| | ||| |||| | Sbjct 9197 ATTACCGGTTTGAAACCAGGAGATTTTATTCATACCACTGGTGATACCCATGTTTATAAG 9138 Query 19182 AATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTT 19241 |||||||| || |||| || | || ||| || |||||| ||||| || | Sbjct 9137 AATCATATTGAACCTTTGAAGGAACAACTAAAACGT------AAACCTCGTCCTTTCCCT 9084 Query 19242 AAA------ATTATTCGAAATGTAACAGATATAAACGACTTTAAATGGGACGATTTTCAG 19295 ||| || | || | || | |||||| | || || |||| || |||||| | Sbjct 9083 AAATTGCTCATAAAACGTGAAGTTAAGGATATAGAGGATTTCAAATTTGAAGATTTTGAA 9024 Query 19296 CTTGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTT-AATGGATTT 19353 ||| || ||||| || | || || |||||||||||||| ||| | ||| ||| Sbjct 9023 ATTGTCGGCTATAAACCTTATCCAAAAATAGAAATGGAAATGGCTGTTTGAGTGGGTTT 8965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399055690968375