Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq82145 172 8e-38 seq76450 159 5e-34 seq10922 116 6e-21 seq43370 105 1e-17 seq8915 104 4e-17 seq10127 87.8 3e-12 >seq82145 Length=1636 Score = 172 bits (190), Expect = 8e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||| | || |||||||| || ||| | ||| |||| | Sbjct 1171 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 1230 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||||||||| || ||||| || ||||| |||||| Sbjct 1231 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAA 1290 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||||| || || | || ||||| ||||||||| Sbjct 1291 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 1350 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || ||||||||||| |||||||| || ||||| || ||| || Sbjct 1351 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGCATGCAAATTT 1408 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || ||||| || || ||||| ||||| | Sbjct 1399 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTCG 1458 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||| ||||| ||||||||||| || || |||||| Sbjct 1459 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1518 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || || || || || ||| | || || ||| || || || Sbjct 1519 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAAC 1578 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | || ||||| || ||||| || |||||||| Sbjct 1579 ATTCAAAAAGAATCCACCCTTCACTTGGTATTGCGTTTGCGTGGTGGTAT 1628 >seq76450 Length=4187 Score = 159 bits (176), Expect = 5e-34 Identities = 330/496 (67%), Gaps = 0/496 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || ||||| ||||| ||||| || ||||||| | ||| |||||||| | Sbjct 933 CCCACATAACCATTGGGATCTCGGCCATCTAAACTATACTTATCATTAAGTAAAATGGCA 874 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 || || | ||||| || | |||||| ||||| ||||| |||||||||||||| Sbjct 873 TATTCCAAAGCCTGCTCTGGAGACTCTGTCCACTCTAAGATTTTCTTAGCCCAATACATG 814 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 | ||| | |||||||||||||| | ||| || || ||| | | |||||||||| Sbjct 813 CGCAAAAAGCCATGCATTTTACCTTCATTAACCAGCTGCAGTTGAGCAGAATTCCATAAA 754 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107 | |||||||| || ||||||| || | | |||| | | | | |||| Sbjct 753 TCATCATGAGTGCGTGACTTTTCAAATTCTTCCATTGTATAGCAAGGACTACGCTTATCT 694 Query 203108 TTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAA 203167 || ||| ||||| |||||||| ||||||| || ||| | | ||| || || Sbjct 693 TTGCGATGATCATTAAGTGTTTTAGCTGCCCAAGCATGTAAACCTTGAAGATTGTCATAG 634 Query 203168 TTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAA 203227 ||| || ||||||||||||||||| | |||| | || ||| |||||||||||| Sbjct 633 TTTCTGTTGTAATAACAAAAATTATCCGCCAATTCTCGTCTAACAATTGCTTCTTCACAA 574 Query 203228 AAAACTTCTACCGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAATATTATTCTT 203287 || |||| || || | | || ||||||| | |||| || || || | | Sbjct 573 AATGCTTCCACAGAATCCTTAAATTTAGTTTTATACTCTTTAACCTCCAAGATGCAACGT 514 Query 203288 TGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTT 203347 || |||||| ||||||||||| | ||| || |||||| || ||||| | | Sbjct 513 TGCACTGAAATCTGACCAAAATGAAACCAAGGCGATAAACCCGATAAAGCATTCTGAGTG 454 Query 203348 GGATCATTTCTTTTTT 203363 |||||||| | ||||| Sbjct 453 GGATCATTACGTTTTT 438 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 202756 ATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATAT 202815 || |||||||||||| | | | || || | |||| ||||||| | ||| ||||||||||| Sbjct 1111 ATTAACATCAAATTTCCTTTTGCAGCCCTGATAATTCATATAACGAATCTTACCAAATAT 1052 Query 202816 TGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869 | | |||| ||| || |||||||||||||| ||| |||||||| || || Sbjct 1051 CGCACGTTCTGCCCAACCTTGATCATGAATACCACCAATAGACCACATGCAACC 998 >seq10922 Length=8781 Score = 116 bits (128), Expect = 6e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || ||||| || || || || ||| | ||| | || | Sbjct 3234 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATTACTCTTGAGGTCGAGCCGTC 3175 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || ||||| || |||||||| || ||||| ||||| Sbjct 3174 GGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 3115 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || ||||||||||| || ||| |||| || | ||||| || Sbjct 3114 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACCCTCTCGGATTACAA 3055 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 |||| |||| ||||| | | |||| || || || ||| | || |||||| ||||| Sbjct 3054 TATTGAAAAGGAATCCATTCTGCACTTAGTATTGCGTCTTCGTGGTGGTGCAAAAAA 2998 >seq43370 Length=3724 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| ||||||||||| || || ||||||||| | | || || || || ||| Sbjct 2446 AAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAACAACGTTTGATCTTCGCTGGTAAA 2505 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| |||| || || || || || || ||||| ||||| ||||| ||| Sbjct 2506 CAATTGGAAGATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACTTTACAT 2565 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | || |||||||| Sbjct 2566 TTGGTACTCCGTCTTCGTGGTGGTAT 2591 >seq8915 Length=10834 Score = 104 bits (114), Expect = 4e-17 Identities = 266/399 (67%), Gaps = 12/399 (3%) Strand=Plus/Plus Query 205569 TTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGC 205628 |||| | ||||||||||| || || | | |||| | | | ||| | |||||||||||| Sbjct 9368 TTGTGCCAAACAATGACAGGGCGGCAAAGCCATTTGTGGTATATCAAGAGGATTCCAGGC 9427 Query 205629 TGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAA 205688 || | ||| ||| || | | || ||| | ||| |||| || | | ||| Sbjct 9428 TGACATTATAATACGTCGATCATTTGGATTAGTACGTATAGTATTGATGACCTCCTTTAG 9487 Query 205689 TTGATCAAATCCTTGATTTGTATAAT--TTGTATCCATATCAATATATTTAGCACCAAAA 205746 ||||| | || | ||| | |||| | || | | | |||| || ||||||||| Sbjct 9488 CTGATCCACACCCTCATTGGAGTAATCATCGTGGCAAGTGCGATAT--TTGGCACCAAAA 9545 Query 205747 TGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCA 205806 ||||||||||| |||||||| || ||||| |||||||| |||| | ||| ||||||| Sbjct 9546 TGACGCCATTGGAAACCATACACAGGACCCAAATCACCCTCTTCGCGATCGGTAAAACCT 9605 Query 205807 CGtttttttatatattttaatgat--ccattttcatcccaaatatggattcctttatttt 205864 ||| | | |||| | ||| | ||| ||||||||||||| || || | | Sbjct 9606 AATTTATCCAAGAATTT--ACGATCGCTATTACCATCCCAAATATGTAT--GTTCTTCTC 9661 Query 205865 ttaGAATATTT--GTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCC 205922 || ||||||| | || || | ||| || |||||| || | ||||||| | | | Sbjct 9662 TTGCAATATTTTGGCATCGGTGCAACCATGTACAAACCACAAAAGTTCTTCAGCCACCGC 9721 Query 205923 TCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGA 205961 | |||||| | | || || || || || ||||| || Sbjct 9722 ACGCCAAAATACTCGCTTGGTGGTTAACAAAGGAAAAGA 9760 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 205312 ACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttttt 205371 |||| | |||||| ||||| || || || ||| |||||| || ||||| || Sbjct 9061 ACTTCACGTTTTATGAGCAATTTAGGGAAAGGACGAGGTTTACGTTTTAGTTGTTCCTTC 9120 Query 205372 AATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATAT 205431 || | ||||||||| ||| | ||| | || |||| | |||||||||| || | Sbjct 9121 AAAGGTTCAATATGATTCTTATAAACATGGGTATCACCAGTGGTATGAATAAAATCTCCT 9180 Query 205432 GGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTA 205491 ||||| ||| || | ||| ||||||||||| || | |||| ||| ||| | |||| Sbjct 9181 GGTTTCAAACCGGTAATATGAGCAATCATATATGTTAGTAAAGCATATGAAGCTATATTA 9240 Query 205492 AATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATG 205540 ||||| || || | |||||| ||||| | |||||||| ||||||| Sbjct 9241 AATGGCACTCCAAGACCCATGTCAGCACTGCGTTGATACAACTGACATG 9289 >seq10127 Length=8452 Score = 87.8 bits (96), Expect = 3e-12 Identities = 167/245 (68%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || ||||||||||| || | || ||||| | Sbjct 7360 ATGCAGATTTTCGTTAAAACCTTGACCGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 7301 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || ||||| || ||||| |||||||| || || ||||| Sbjct 7300 GATACCATTGAGAACGTGAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 7241 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || |||||||| || ||| | || || | || || || Sbjct 7240 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGACGCACCCTTTCTGACTACAAC 7181 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || || || ||||| || | ||||| || || ||||| || |||||||| ||| ||| Sbjct 7180 ATCCAGAAGGAATCCACCCTCCATTTAGTATTGCGTTTGCGTGGTGGTATGCAAATCTTC 7121 Query 124778 ATAAA 124782 |||| Sbjct 7120 GTAAA 7116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754586517360000