Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq74052 244 1e-59 >seq74052 Length=11856 Score = 244 bits (270), Expect = 1e-59 Identities = 493/724 (68%), Gaps = 8/724 (1%) Strand=Plus/Plus Query 16050 CCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 ||||||||| | || | ||| |||||||||||||| || | | ||| || | ||| | Sbjct 5433 CCAATTCCACTAGCAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAAT 5492 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| ||||| || || || || | || ||||| | || | || ||| || || |||| Sbjct 5493 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCG 5552 Query 16170 CTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT-TAATAAGTGTTTAAAC 16228 |||| |||| || || | | | | || | || ||| || || ||||||||| Sbjct 5553 CTTCGGTGATAATTTCAATAATT-CTCTCCCGACTGGGACGTTGTACCAAATGTTTAAAC 5611 Query 16229 ATTA-TACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAA 16287 |||| ||| |||||||||||||| || || || || | || || || || || || Sbjct 5612 ATTAATACC-GCAAAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAA 5670 Query 16288 TGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGA 16347 ||||||||| ||||| || || ||||| || | ||| || || | |||||| ||| Sbjct 5671 TGTAAGACCAGGCATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACT 5730 Query 16348 AAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CTAttt 16405 ||||| ||||| || || || ||||| |||| | || ||||| | | | |||| Sbjct 5731 GAAGAAAATACCCTCCACAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTT 5790 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | ||||| ||||||||| || || | |||||| ||| | || Sbjct 5791 CGAGGAA--ATCCAAGCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCA 5848 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 || |||||||| | ||||| | | || ||| ||||||| |||| ||||| | | Sbjct 5849 ATGGCATTAAAGAGATAATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATA 5908 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||||||||||| || || | ||| ||||| || || || || ||||| || || | || Sbjct 5909 CTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCC 5968 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | | ||||||||| | | || | ||| | | ||||| || || || |||||| Sbjct 5969 TCTGTAACTTGTACTTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCG 6028 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 ||| ||||| || || || | ||| ||| |||| ||| || || | ||| || Sbjct 6029 GAAGCAGCAAAGAAAGCTAGAACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTT 6088 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 |||||| ||| ||||| || | ||| || ||||||||||||||||||||||| | Sbjct 6089 TCCCAGTCGGAATTGTCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTTCG 6148 Query 16766 GCCT 16769 |||| Sbjct 6149 GCCT 6152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461979677595000