Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq74052 199 4e-46 seq14616 82.4 7e-11 >seq74052 Length=11856 Score = 199 bits (220), Expect = 4e-46 Identities = 473/709 (67%), Gaps = 12/709 (2%) Strand=Plus/Plus Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 ||| | ||| || | ||| || | || || || |||| ||||| || | ||||||||| Sbjct 5437 TTCCACTAGCAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCAT 5496 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 ||||| | || || || | || || | ||||||| ||| || ||| || || Sbjct 5497 GCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTC 5556 Query 14143 GTTTATAATAATCGTAATAATT---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 14199 | | ||||| || ||||||| || | ||| | | | | ||||||||| || Sbjct 5557 GGTGATAATT-TC--AATAATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACAT 5613 Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 ||| ||||||||||||||| | |||||||| | ||| | ||| || || ||||| Sbjct 5614 TAATACCGCAAAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGT 5673 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 | || ||||| | || ||||| |||| ||| || || | || || || || Sbjct 5674 AAGACCAGGCATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAA 5733 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||| || ||||| || |||||||| || || | ||||| ||||| || ||| Sbjct 5734 GAAAATACCCTCCACAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCGA 5793 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 || ||||| ||||||| |||| || |||| | ||| |||||||| || Sbjct 5794 GGAAATCCAAGCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGC 5853 Query 14440 ATTAAATAAATGTTC---CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14496 |||||| | || || || ||| | | ||| ||| || ||||||| || | || Sbjct 5854 ATTAAAGAGATAATCACGCTGCTCGCGA-TCCTT--AATATAACTATCAATTAGAATACT 5910 Query 14497 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 ||||||||||||||||| |||||||| || || || || ||||| ||||| | || || Sbjct 5911 ATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTC 5970 Query 14557 TGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 || |||||| ||| | | || | ||| | | ||||||||| || || ||||| Sbjct 5971 TGTAACTTGTACTTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGA 6030 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTT 14676 ||| ||||| || || | | | | ||| || | | || | | | ||||| ||| Sbjct 6031 AGCAGCAAAGAAAGCTAGAACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTTTC 6090 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14725 ||| |||| || || |||||||| ||||| || || ||||||||| Sbjct 6091 CCAGTCGGAATTGTCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAA 6139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 |||||||| ||||||| | |||||||||||| || || | | || || | |||| Sbjct 5203 TAAAAATCGGCATCTAATGTAAAAACATTATCTAAACGGTGAGTAGTTACACCTAATTTT 5262 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||||| |||| | ||||||||| |||||||| || |||| || || ||||| Sbjct 5263 TGATATTCACCAACTTTACGTTCAAAGAAATTAGTTTTGCCATCCAAAGAGATCATTTCC 5322 Query 13976 ATAAAATCAAATGGATTT 13993 ||||| || |||||| Sbjct 5323 ATAAAGGGGAAGGGATTT 5340 >seq14616 Length=5376 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 139599 TGGTGGTGTTTTACATACAAAATTTTTAATTTCGGATGAGTTGCACGCATATATTGGAAG 139658 |||||||||||||||||||||||||| ||||| ||| | ||| ||| | || || Sbjct 1448 TGGTGGTGTTTTACATACAAAATTTTGGATTTCCGATAACAAACACATTTATTTGGGCAG 1389 Query 139659 CGCTAATATGGATTGGAGGTCTCTTTCTCAAGTTAAAGAACTTGGTAT 139706 || |||||||| ||||| ||| | | || ||||||||| | ||||| Sbjct 1388 TGCCAATATGGACTGGAGATCTTTAACACAGGTTAAAGAATTGGGTAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481790450361000