Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10127 125 5e-24 seq43370 107 1e-18 seq82145 98.7 8e-16 >seq10127 Length=8452 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| || || || || || ||||| ||||||||||| | | Sbjct 6906 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 6965 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||||||||||||| ||| |||| | | ||| ||||| || Sbjct 6966 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGA 7025 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | |||||| | | ||| |||||| |||||| | Sbjct 7026 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACT 7085 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| |||| |||||||| || ||||| || |||||||| Sbjct 7086 TCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | ||||||||||||| Sbjct 7158 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCCAATTGT 7217 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| | | ||| ||||| ||| | ||||||||||| |||| Sbjct 7218 TTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATTTTA 7277 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| || || || || ||| | |||||| ||||||||||| Sbjct 7278 GCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCGGTC 7337 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 || ||||| || ||||| ||||| Sbjct 7338 AAGGTTTTAACGAAAATCTGCAT 7360 >seq43370 Length=3724 Score = 107 bits (118), Expect = 1e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 18114 AGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 ||||||| ||| ||||| ||||| ||||| ||||||||||||| || || || || Sbjct 2573 AGTACCAAATGTAAAGTG--GATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCAT 2516 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 ||||||||||||| || || |||| | | ||||||||| ||| | ||||| || | Sbjct 2515 CTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGT 2456 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | |||| |||||| | | ||| ||||| |||||| ||| | ||| ||| Sbjct 2455 CTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGG 2396 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 |||| || || || ||||| || || || ||||| | ||| Sbjct 2395 TTTTACCAGTTAAAGTTTTGACGAAGATCTGCATCTATAA 2356 >seq82145 Length=1636 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||| ||||||||||| || || || || | || ||| | ||||| Sbjct 1380 TACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTC 1321 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||||||| ||| | || | | ||||||||| || | |||||||| || Sbjct 1320 CAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 1261 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| | || || || | | ||| ||| || ||||| || | |||||| ||| Sbjct 1260 AATTT-TAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTT 1202 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||||| || ||||| |||||||| Sbjct 1201 TGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378918313795875