Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9860 363 1e-95 seq74052 167 2e-36 seq82145 114 1e-20 seq10127 107 2e-18 >seq9860 Length=13996 Score = 363 bits (402), Expect = 1e-95 Identities = 1131/1743 (65%), Gaps = 29/1743 (2%) Strand=Plus/Plus Query 22262 ATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACG 22321 || || || || |||||||||||||| | ||| || | || || ||||| || Sbjct 9144 ATGAAAGCGCCACGATCGGCGGCCATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACT 9203 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA 22381 |||||||| || | | || | | || || ||| || || | ||| ||| | Sbjct 9204 GTCTTGTATAGATCACGTATATGTTTGGGAATTTCTTCTATGGCTTGTATGGAGCCGCGA 9263 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 ||| || || |||||| || ||| | ||| ||| | | |||| |||||||| Sbjct 9264 TTGGAAATAATTTTATTTTTCATTTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTA 9323 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| | || || || | || || || ||||| || || | |||||| ||| Sbjct 9324 AGCAAATGATGATTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTG 9383 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| ||||||| || ||||||||||| || || || || ||||||||||| || ||| Sbjct 9384 GAGGTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGC 9443 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCA 22619 || || || || || | || || | | || || | |||| |||| ||| | | Sbjct 9444 ATGGGGGCTAATAGCAAAGAATTGCGTACACCATGTTGCTTGA--TTTTCTCCTTCAACT 9501 Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGC 22679 ||||||| ||||| || | || || ||| ||||||||||||||| | | | Sbjct 9502 CTGACCAGTTCCACAAGTCTGTGGGTGTTTTATT---CCACATATCGTATTGTAGTATAC 9558 Query 22680 CGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGC 22739 | ||| | || | ||| || ||||| || | |||| | | |||| | ||| | Sbjct 9559 CCTTACTTACTGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCAC 9618 Query 22740 AGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGG 22799 | || || ||||| ||||| ||||| ||||| ||||| || | | || || | Sbjct 9619 AACTAGCTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACG 9678 Query 22800 CGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGC 22859 | | || || || || |||||| | | || | || || | ||||||||| | Sbjct 9679 CCTTTTCACTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACAC 9738 Query 22860 CTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAAT 22919 |||| || || || || | || ||| || | ||||| ||||| ||||| | | Sbjct 9739 CTATGCCAATAGGACGATGACGCATATTGGATTTCCTAGCCTCAGGCAAGGGATAATAGT 9798 Query 22920 TCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNT 22979 | ||||| || |||| | || |||| | | ||| || | | Sbjct 9799 TAATGTCGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTTTCAATTTTT 9858 Query 22980 CAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATT 23037 ||| || ||| | | | || |||||| | || | ||| || ||||| | ||| Sbjct 9859 TAAAATC--AAAGGTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATT 9916 Query 23038 GCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACA 23097 || ||||| | ||| || || | || |||||||| || || || | ||||| || Sbjct 9917 ACAAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCA 9976 Query 23098 CTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCAT 23157 ||| || ||||| | ||| |||||| ||||| || ||||| | ||| || || | ||| Sbjct 9977 CTTAATGGTGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACAT 10036 Query 23158 GTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTG 23217 || || || || || || || || | || || || || ||| | || |||||| | Sbjct 10037 ATAGGGAGTACCGGTTTCTACTTGGGCTTCAATTATAGCAAACCAAAGAGCCTGAGCCTT 10096 Query 23218 AACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGC 23277 ||| || | | | ||||||| || ||||| ||||| | || ||||| | Sbjct 10097 GACAGTGCGATTGGCCTTACCTTCTTTTTCATACTTGGTATACAATTCTTCGAATTCCTC 10156 Query 23278 ACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTC 23337 ||| || || ||| ||||| ||| |||||||| || ||| | | | Sbjct 10157 ACCCCAAACATCCTGCAGACCGGGACATTTGTGAGGACACATTAGGGACCAG--TCAC-C 10213 Query 23338 ATTTTCA---ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCG 23394 |||||| || ||| ||||||| | || |||||||| | ||| ||||| || || | Sbjct 10214 ATTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACAAAGCATAGAAAAGATCTCT 10273 Query 23395 GGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGC 23454 ||| | ||| || ||||||||||| || || ||||||||||| || || | || | Sbjct 10274 GGCTCTGTGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAAAATATCTGA 10333 Query 23455 ATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGAC 23514 |||||| ||||| | |||| ||||| || || || | || || |||||||| || Sbjct 10334 ATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAAC 10393 Query 23515 GTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCC 23574 ||||||||| ||||| |||| || ||||| || || ||||| || || | |||| Sbjct 10394 ATAACGGGCCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCG-T 10452 Query 23575 TACGCCCGCCACACTCGAA---CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCC 23631 || ||| || | ||| || || |||| || | ||| || | | || || || Sbjct 10453 TAGTGCCG--TCAATGGAAGTGCCCTTAGCTCTAATGCAGTGCACATTTATGCCAATACC 10510 Query 23632 TCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGAT--- 23688 || | ||||| || ||||| || ||||||| || | | | | || ||||| || Sbjct 10511 ACCCGCTGATTTGGAAATCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGA 10570 Query 23689 GCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGC 23748 | || | ||||| | |||||| || || |||| |||| | | |||||||| Sbjct 10571 ATCGGCCACCATGGTC---AACAAGAAGCATGACGACAACTGCGGTCTATTGGTAGCGGC 10627 Query 23749 CGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTC 23808 || |||| ||| || || || ||||| || | | |||| | ||| || || || Sbjct 10628 CGCAAACAATGTAGGTGAAGCATGAGTAAAATAACGCTCAGACAACAAATTATAAGTTTC 10687 Query 23809 GATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTG 23868 || || | |||||| || ||||| |||||||| || || || | ||| | ||| | || Sbjct 10688 AATAGCCGAATCAATATCATCTCCATGTATACCTATAGCTACTCTCATTAACATATGCTG 10747 Query 23869 AGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAA 23928 |||||||| || | || || ||||| | || ||| || | | || || || || Sbjct 10748 TGGTCTCTCAACAATCTTACCATTCATTTTCAGCAAATAAGATCTCTCCAGTGTCTTGAA 10807 Query 23929 TCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGC 23988 || || |||| ||| |||||||||||| | | || | |||||| ||||| | || Sbjct 10808 GCCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAATTGACGAATTTAAACGTTCTGC 10867 Query 23989 ATT 23991 ||| Sbjct 10868 ATT 10870 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || || ||||| || || || || || || || || || | | |||||||||||| Sbjct 8923 TTATCTACGGTAAATTGAATAGCATTGGCTGCTGGCTTTGTTCTCAAATAATACATGCCG 8982 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 ||||| | || ||||| || || |||||||| || |||||||| || ||| | ||| Sbjct 8983 GTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGC 9042 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280 | ||| | | ||||||||| ||||| ||||| || || || || ||||||| Sbjct 9043 TCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGATCGG 9097 >seq74052 Length=11856 Score = 167 bits (184), Expect = 2e-36 Identities = 469/710 (66%), Gaps = 20/710 (3%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| || |||||||| || |||||||| || || || || || ||| | Sbjct 6152 AGGCCGAAGCTTCTTTTTGGACTGTAGAAGAAGTGGATCTTTCCAAAGACAATTCCGACT 6093 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 |||| |||| || ||| | |||| ||| ||| || | || || || || | Sbjct 6092 GGGAAAGACTCACCGACAATGAACGTCATTTCATTTCACATGTTCTAGCTTTCTTTGCTG 6033 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 | |||||||| ||||| || || ||| | || ||| | || || |||||||| ||||| | Sbjct 6032 CTTCCGATGGCATTGTCAATGAAAATCTTGTTGAACGCTTCTCCCAAGAAGTACAAGTTA 5973 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | ||||| | || || || || || ||| | ||||| ||||| || || || ||||||| Sbjct 5972 CAGAGGCACGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAATGTACACTCTGAAATGT 5913 Query 57829 ATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA----CTGTTC 57884 || | || || |||| || | ||||| || |||| | ||| || || || Sbjct 5912 ATAGTATTCTAATTGATAGTTATATTAAGGAT--CG-CGAGCAGCGT-GATTATCTCTTT 5857 Query 57885 AACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGG 57941 || || || ||||| ||||| || | ||| ||||| || ||| | || ||| Sbjct 5856 AATGCCATTGAAACTATGCCGGCTGTT---AAGCGTAAGGCTGATTGGGCTATGGCTTGG 5800 Query 57942 ATAAAAAGCGCCA-CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGG 58000 || || | |||| | || | || | | || || || || || || || || Sbjct 5799 ATTTCCT-CGAAATCGGCTAATTTTGGTGAACGTATTATTGCTTTTGCTGCTGTGGAGGG 5741 Query 58001 TATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060 ||| ||||| ||||| ||||| | || || ||| | |||||||| || || ||||| Sbjct 5740 TATTTTCTTCAGTGGCAGTTTTGCCTCCATCTTCTGGCTAAAGAAACGTGGTCTTATGCC 5681 Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120 || || || || ||| || ||||| || || || |||||| | ||| ||||||||| Sbjct 5680 TGGTCTTACATTCTCCAATGAATTGATTTCACGTGATGAGGGTTTACATTGTGATTTTGC 5621 Query 58121 GTGCCTAATGTACTCTCACATTGTCAATAAA--CCGACGCGGGATCGCATCTTGGACATT 58178 | |||||| | ||||| | || || | ||||| | || | || ||| Sbjct 5620 GGTATTAATGT--TTAAACATTTGGTACAACGTCCCAGTCGGGAGAGAATTATTGAAATT 5563 Query 58179 ATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATG 58238 |||||||| ||||| || ||| | || || | || || || | || || || Sbjct 5562 ATCACCGAAGCGGTGAAAATTGAACAAGAATTCCTTACAGATGCTTTGCCCGTCAATTTG 5503 Query 58239 CTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 | || ||||| | | ||||||||| | ||||| || ||||| ||||| Sbjct 5502 ATAGGCATGAATTGTAAATTGATGTCAGAATACATAGAATTTGTGGCCGA 5453 >seq82145 Length=1636 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| |||||||| ||||| | || ||||| || || Sbjct 1170 CATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTC 1229 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | |||| || ||| | ||| ||||||||||| | || || || || Sbjct 1230 CGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCA 1289 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || || ||||||||||| ||||||||| || || |||||||| Sbjct 1290 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAA 1349 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || ||||||||||| || | ||| ||||| Sbjct 1350 TATACAAAAAGAATCTACATTGCATTTGGTA 1380 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || || | || || ||||| || || | || |||||||| || Sbjct 1398 CATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTC 1457 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | |||| || ||| | ||| ||||| ||||| | || || || || Sbjct 1458 GGATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 1517 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || |||||||| || ||||||||||| ||| | ||| || || Sbjct 1518 ACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAA 1577 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 ||||||||||||||| || ||||| ||||| Sbjct 1578 CATTCAAAAAGAATCCACCCTTCACTTGGTA 1608 >seq10127 Length=8452 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| |||| || ||||| |||||| | || || || || || Sbjct 7132 ATGCAAATCTTCGTAAAGACCTTGACCGGTAAAACCATCACCTTGGAAGTCGAGCCTTCG 7073 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | || || || ||| Sbjct 7072 GACACTATTGAAAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAG 7013 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || || |||||||| |||||||| | ||| || || || ||| Sbjct 7012 CAACGTTTGATCTTTGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCTGACTACAAC 6953 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || || || || ||| |||| || Sbjct 6952 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCT 6921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445253350734000