Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq74052 158 2e-33 seq8915 118 2e-21 >seq74052 Length=11856 Score = 158 bits (174), Expect = 2e-33 Identities = 238/335 (71%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||| | |||| ||| |||| |||||||| || || || || ||||| ||||| | Sbjct 5780 ATTTTGGTGAACGTATTATTGCTTTTGCTGCTGTGGAGGGTATTTTCTTCAGTGGCAGTT 5721 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | || ||||| |||||| | ||||| | ||| || |||||||||| || | |||||||| Sbjct 5720 TTGCCTCCATCTTCTGGCTAAAGAAACGTGGTCTTATGCCTGGTCTTACATTCTCCAATG 5661 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGG 102080 | || ||||| | || || ||| | ||| | || ||||| | |||| ||| | Sbjct 5660 AATTGATTTCACGTGATGAGGGTTTACATTGTGATTTTGCGGTATTAATGTTTAAACA-- 5603 Query 102081 GTTTTGTTGATAC--CCCA-TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCC 102137 |||| | || |||| || |||| | ||| |||||||| |||| ||||| || Sbjct 5602 --TTTGGTACAACGTCCCAGTCGGGAGAGA--ATTATTGAAATTATCACCGAAGCGGTGA 5547 Query 102138 GAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCA 102197 ||||||||||||||| || |||| | | |||| || || || | || ||||| || | Sbjct 5546 AAATTGAACAAGAATTCCTTACAGATGCTTTGCCCGTCAATTTGATAGGCATGAATTGTA 5487 Query 102198 AGTTGATGAGCCAGTACATTGAATTTGTGGCAGAT 102232 | |||||| | ||||| ||||||||||| ||| Sbjct 5486 AATTGATGTCAGAATACATAGAATTTGTGGCCGAT 5452 >seq8915 Length=10834 Score = 118 bits (130), Expect = 2e-21 Identities = 209/301 (69%), Gaps = 9/301 (3%) Strand=Plus/Minus Query 35152 CGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCG 35211 |||| | |||||| || ||| ||||||||||||| |||||||| | ||| | | || Sbjct 9824 CGATCGCACTGGAGTGGGTACTGTATCCATTTTTGGTGCCCAAATGCGTTTCGATATGCG 9765 Query 35212 AGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGA 35271 | || || |||| | | || |||||| | | || ||| | | || | ||||| Sbjct 9764 ---CAACTCTTTTCCTTTGTTAACCACCAAGCGAGTATTTTGGCGTGCGGTGGCTGAAGA 9708 Query 35272 ACTCTCGTGGTTCAT-CAGGG--GCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGAT 35328 ||| | |||||| | || || ||| | || |||||| |||| ||||||| || Sbjct 9707 ACTTTTGTGGTTTGTACATGGTTGCA---CCGATGCCAAAATATTGCAAGAGAAGAACAT 9651 Query 35329 ACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAG 35388 ||| || ||| | | |||| | || |||| ||||| | ||| || |||| | Sbjct 9650 ACATATTTGGGATGGTAATAGCGATCGTAAATTCTTGGATAAATTAGGTTTTACCGATCG 9591 Query 35389 AGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA 35448 | |||||| |||||||| || || || || ||||||||||||||||||||||| |||| Sbjct 9590 CGAAGAGGGTGATTTGGGTCCTGTGTATGGTTTCCAATGGCGTCATTTTGGTGCCAAATA 9531 Query 35449 T 35449 | Sbjct 9530 T 9530 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 35606 GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGAT 35665 || ||||| |||||||| ||||| ||| | || || ||||||||||| || || | || Sbjct 9320 GCACAATTCTATGTGGCCAATGGTGAACTATCATGTCAGTTGTATCAACGCAGTGCTGAC 9261 Query 35666 GTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCC 35725 | || | || ||||| || ||||| || ||||| || | || || || |||| || Sbjct 9260 ATGGGTCTTGGAGTGCCATTTAATATAGCTTCATATGCTTTACTAACATATATGATTGCT 9201 Query 35726 AGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTAT 35785 ||| ||| | ||||| ||||| ||||| | || |||||| | || ||||| Sbjct 9200 CATATTACCGGTTTGAAACCAGGAGATTTTATTCATACCACTGGTGATACCCATGTTTAT 9141 Query 35786 AATACCCACATTGA 35799 || | || ||||| Sbjct 9140 AAGAATCATATTGA 9127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988416576931625