Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9860 479 4e-130 seq74052 264 1e-65 seq14616 105 8e-18 >seq9860 Length=13996 Score = 479 bits (530), Expect = 4e-130 Identities = 1391/2120 (66%), Gaps = 30/2120 (1%) Strand=Plus/Plus Query 62193 ATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATA 62252 ||||| || || | || || ||||||| |||| | ||||| | ||| ||||||| Sbjct 9144 ATGAAAGCGCCACGATCGGCGGCCATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACT 9203 Query 62253 GTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGT-TTGTATTC--TGAATGGATCCACC 62308 || || || | || | || ||| || |||| | || ||| || ||||| || | Sbjct 9204 GTCTTGTATAGATCACGTA-TATGTTTGGGAATTTCTTCTATGGCTTGTATGGAGCCGCG 9262 Query 62309 ATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCT 62368 || ||||| |||| || || ||||||| |||||| | ||||||||| || | Sbjct 9263 ATTGGAAATAATTTTATTTTTCATTTCATCATCCCATAAATCAAGTTCGGTTAAATCTTT 9322 Query 62369 AAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATT 62428 ||| | ||| | || || || | ||||||||| ||||| || | | |||||||||||| Sbjct 9323 AAGCAAATGATGATTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATT 9382 Query 62429 ACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGG 62488 ||| |||||||| | || ||||| || || | |||||| || || || || || || Sbjct 9383 GGAGGTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGG 9442 Query 62489 CATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGA 62546 ||| || || | | ||| ||| | | ||| ||||| ||||||| || || | Sbjct 9443 CATGGGGGCTAATAGCAAAGAATTGCGTACACC--ATGTTGCTTGATTTTCTCCTTCAAC 9500 Query 62547 TGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCG 62606 | | ||| ||||| | || | ||| | |||||||| ||||| Sbjct 9501 TCTGACCAGTTCCACAAGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCC 9560 Query 62607 TTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACA 62665 ||||| | | || | || ||| || ||||||| || || || || || | || ||| Sbjct 9561 TTACTTACTGGAC-AGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACA 9619 Query 62666 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGC 62725 ||| || || ||||| || |||||||| ||||| || |||| | ||||| || Sbjct 9620 ACTAGCTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGC 9679 Query 62726 TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACC 62785 | || ||| | || ||| | | ||| || | || || || || |||||||| Sbjct 9680 CTTTTCACTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACC 9739 Query 62786 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTC--AGCTTCTGGAATAGGATAATAA 62843 || || ||||| | ||| | | |||| || |||| ||| || || | |||||||| Sbjct 9740 TATGCCAATAGGACGATGACGCATATTGGA--TTTCCTAGCCTCAGGCAAGGGATAATAG 9797 Query 62844 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 62903 ||||| || || ||||| |||||||| || ||| ||||| |||| |||| ||| Sbjct 9798 TTAATGTCGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTTTCAATTTT 9857 Query 62904 AGAAAATCAAATCGCCCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTA 62960 ||||||||| | ||| | |||||||| || | || | || |||| |||| Sbjct 9858 TTAAAATCAAAGGTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTA 9917 Query 62961 CACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 63020 || ||||||| ||||| || | | ||||| || ||||| ||||| | || || ||| Sbjct 9918 CAAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCAC 9977 Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080 || || || || | |||||| || ||||| || ||| || ||||| ||||| | || Sbjct 9978 TTAATGGTGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACATA 10037 Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63140 | |||||||| ||||| | || | ||| || || || ||| | | ||||||| Sbjct 10038 TAGGGAGTACCGGTTTCTACTTGGGCTTCAATTATAGCAAACCAAAGAGCCTGAGCCTTG 10097 Query 63141 ATTATA-GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTC 63199 | | |||| | | |||| || |||| || ||||||||| |||||| || || Sbjct 10098 ACAGTGCGATTGGCCTTACCTT-CTTTTTCATACTTGGTATACAATTCTTCGAATTCCTC 10156 Query 63200 TCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63259 |||||||||| | || | ||||||| | |||||||| | ||||| || || | Sbjct 10157 ACCCCAAACATCCTGCAGACCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATT 10216 Query 63260 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTG 63318 || | ||| ||||||||||| | || || ||||| | ||| ||| || |||||||| | Sbjct 10217 TTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACAAAGC-ATAGAAAAGATCTCTGG 10275 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 ||| || || || || || || || || || | ||| | || | | |||||| |||| Sbjct 10276 CTCTGTGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAAT 10335 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| || ||||| || || || | | ||||| |||||| || |||||||| | | Sbjct 10336 GCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACAT 10395 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 | | || || ||| | || || | |||||| | | ||| ||||| | || || | Sbjct 10396 AACGGGCCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCGTTAG 10455 Query 63499 TACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCC 63556 | ||| || | || | || | ||| | | | ||| || || || || || Sbjct 10456 TGCCGTCAATGGAAGTGCCCTTAGCTCTAATGCAGTGCACATT--TATGCCAATACCACC 10513 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 || ||| || || | || ||| ||| | | | | || || || || ||| Sbjct 10514 CGCTGATTTGGAAATCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGAATC 10573 Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 | | |||| | | | || || |||| || | | | | || | || ||| Sbjct 10574 GGCCACCATGGTCAACAAGAAGCATGACGACAACTGCGGTCTATTGGTAGCGGCCGCAAA 10633 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 || ||||| ||||| || ||||| | ||||| | | ||| || || |||||||| Sbjct 10634 CAATGTAGGTGAAGCATGAGTAAAATAACGCTCAGACAACAAATTATAAGTTTCAATAGC 10693 Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 || || ||||| | ||| || |||| || || | ||||||||| ||||| ||||| Sbjct 10694 CGAATCAATATCATCTCCATGTATACCTATAGCTACTCTCATTAACATATGCTGTGGTCT 10753 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 |||||||| || || ||||||| ||| || ||| | |||| || || || || || Sbjct 10754 CTCAACAATCTTACCATTCATTTTCAGCAAATAAGATCTCTCCAGTGTCTTGAAGCCGAA 10813 Query 63857 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTT 63916 |||||||| |||||| || || |||||||| |||||| | || || ||| Sbjct 10814 GTAGTTGTAGCCAAAGTCACGATCATAAATAATTGACGAATTTAAACGTTCTGCATTTTT 10873 Query 63917 GTTAACTATATCCATGGTAATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 63975 | |||| || | || || | ||||| | || || || |||| | | || Sbjct 10874 CTGCACTACAT-TGTAGTGGTATTCGGAAATCAAAGGCGATGGTCTCCCCGTCTCTTTAT 10932 Query 63976 TAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTA 64035 ||||| | | | | ||| || || || |||| |||||| ||||| ||||| | Sbjct 10933 TAACAAAATGATACAGATCACTTATAACCTCTGAGAATACTTTTTTCGTTTCTTTGTGCA 10992 Query 64036 GATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG 64095 ||| |||| || || | || || | ||||||||||| ||| | ||||| | | Sbjct 10993 AATTGGATACTGCAATACGAGCTGCCAATATGGCATAATCGCCATGATTAGTAGTTAATG 11052 Query 64096 TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 64155 | || || | || || |||| | | || | |||| || || || ||| || | | Sbjct 11053 TAGCAGCAGTCTCTGCCGCCAAATTATCTAGTTCTTGTGTAGTAACACCACAGTAAAGGC 11112 Query 64156 CTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGC 64215 | | ||| ||||||| | || | ||||| | |||| | || |||||||||| Sbjct 11113 CATTAATTACCTTCAGTGTAATGGCCACTGGATCAACGAAATCCATATTCAAGCCATAGC 11172 Query 64216 ACAATTTTCTAATACGAGACGTGATTTTATCAAACATG-ACATTTTCCTTGTATCCATTT 64274 | | ||| ||| || || || |||||||| || ||| || | ||||||| ||||| | Sbjct 11173 ATAGCTTTTGAATTCGTGATGTTATTTTATCGAA-ATGAACCTCTTCCTTGCGTCCATCT 11231 Query 64275 CGTTTAATGACAAACATTTT 64294 ||||||| ||||||| ||| Sbjct 11232 CGTTTAAGAACAAACAATTT 11251 >seq74052 Length=11856 Score = 264 bits (292), Expect = 1e-65 Identities = 498/726 (69%), Gaps = 15/726 (2%) Strand=Plus/Plus Query 33397 CCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 ||||||| | ||| | ||| || || |||||||| ||| | ||||| || ||||| Sbjct 5433 CCAATTCCACTAGCAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAAT 5492 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| ||||| | || || || | ||| | ||||| |||||||||||||| |||| Sbjct 5493 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCG 5552 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACA 33576 | | || ||||| ||| | || ||| || | |||| ||||||||||||| Sbjct 5553 CTTCGGTGATAATTTCAATAATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACA 5612 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 | || || ||||| || || | |||||| || | ||| ||||| || || || | Sbjct 5613 TTAATACCGCAAAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATG 5672 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 | || || ||||| || ||||| || || ||||| || ||||| || || || | Sbjct 5673 TAAGACCAGGCATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGA 5732 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCA 33755 |||| || || || || |||||||| ||||||| | || ||| || || | | || Sbjct 5733 AGAAAATACCCTCCACAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCG 5792 Query 33756 TGTA--TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | | |||| ||||||||| ||||| || ||| ||||| ||||| |||| Sbjct 5793 AGGAAATCCAAGCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGG 5852 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 ||||||||||||| | | | | ||| |||| |||| |||| || | || ||||| Sbjct 5853 CATTAAAGAGATAATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTAT 5912 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 ||||||| || || | ||||| ||||| || || || || |||||||| | ||||| | Sbjct 5913 ACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTG 5972 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 ||| || |||||| | || ||||| | | ||||||||| || || ||||| | Sbjct 5973 TAACTTGTACTTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAG 6032 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTAT 34050 | ||||| || || | |||||| || |||| || | ||| |||| ||| | | Sbjct 6033 CAGCAAAGAAAGCTAGAACATGTGAAATGAAATGACGTTCATTGTC-GGTG--AGTCTTT 6089 Query 34051 TCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 ||| || |||| ||||| || | |||||||||||| || |||||||| || || | Sbjct 6090 CCCAGTCGGAATTG---TCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTT 6146 Query 34108 CTGCCT 34113 | |||| Sbjct 6147 CGGCCT 6152 >seq14616 Length=5376 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 28696 AATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATA 28755 |||||||||||| || ||||| |||| |||||||| ||||| || || || || ||||| Sbjct 1340 AATACCCAATTCTTTAACCTGTGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 1399 Query 28756 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 28803 ||| ||| | ||||| || ||||||||||||||||| | ||| || || Sbjct 1400 AATGTGTTTGTTATCGGAAATCCAAAATTTTGTATGTAAAACACCACC 1447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629092719306000