Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9860 286 3e-72 seq74052 196 5e-45 >seq9860 Length=13996 Score = 286 bits (316), Expect = 3e-72 Identities = 965/1484 (65%), Gaps = 29/1484 (2%) Strand=Plus/Plus Query 37130 GATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATG 37189 |||| ||||| | || ||||| || || || | ||| || || |||||| || || | Sbjct 9334 GATTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTGGAGGTGTACG 9393 Query 37190 GTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTA 37249 |||||| ||| ||||| || | || ||||| | || || || || ||||| || |||| Sbjct 9394 GTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATGGGGGCTA 9453 Query 37250 TTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCC 37309 ||| | ||| | | |||||| || ||| ||| || | || ||| | || Sbjct 9454 ATAGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCTGACCAGTTCC 9513 Query 37310 ATAAATCTGTTGGGTTCTTTAA-CCACATATCATATTGTAGAATACCTTTACTCGCTGGA 37368 | || ||||| |||| |||| ||||||||| |||||||| ||||| ||||| ||||| Sbjct 9514 ACAAGTCTGT-GGGTGTTTTATTCCACATATCGTATTGTAGTATACCCTTACTTACTGGA 9572 Query 37369 GAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGT 37428 | || ||| || ||||| | || | ||| || | ||| ||||||| ||| | | Sbjct 9573 CAGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTCCAAT 9632 Query 37429 GCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG 37488 ||| ||||||| || ||||||||||| ||| |||||| | || | ||| || || Sbjct 9633 GCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGCCTTTTCACTCTCA 9692 Query 37489 AATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGT 37548 | | || | || ||| || || ||| || |||||||||||||| || || || || Sbjct 9693 TAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATGCCAATAGGA 9752 Query 37549 CTATGTTTCTTATTAGAT---CTAGACGATTCTATCACTGGATAATAATTGATATCTATT 37605 | ||| | |||| ||| |||| | || || |||||||| || || || || Sbjct 9753 CGATGACGCATATTGGATTTCCTAGCC---TCAGGCAAGGGATAATAGTTAATGTCGATG 9809 Query 37606 ATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAAT 37665 ||||| || ||||| || | | ||| || | || |||| || | || || || Sbjct 9810 ATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTTTCAA-TTTTTTAAAATCAA- 9867 Query 37666 ACGT-TATTAT----TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 | || | || | | ||||| || | | | || || | | |||||| || || | Sbjct 9868 AGGTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAACGGCTA 9927 Query 37721 CTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTC 37780 ||||| | | | ||| || ||||||||| || | || || | |||| || | Sbjct 9928 TCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAATGGTGC 9987 Query 37781 CCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTC 37840 | | ||| || || ||| || || | ||||||||| | ||||| || || | Sbjct 9988 CAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGGGAGTAC 10047 Query 37841 CTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA-AACTTCTTGCTTTAACGATCGCT 37899 | ||||| ||| || || || |||| ||| | | | | ||| | | || | Sbjct 10048 CGGTTTCTACTTGGGCTTCAATTATAGCAAACCAAAGAGCCTGAGCCTTGACAGTGCGAT 10107 Query 37900 T-TAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATAC 37958 | || ||||| |||| || | |||| |||| | || || | ||||| || Sbjct 10108 TGGCCTTACCTTCTT--TTTCATACTTGGTATACAATTCTTCGAATTCCTCACCCCAAAC 10165 Query 37959 ATC--GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||| ||| | || ||||||| | ||||||||||| ||||| || ||| || ||| Sbjct 10166 ATCCTGCAGA--CCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATTTTCTTCC 10223 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || |||| |||||| || || |||| ||| || ||| || | |||| ||| ||| | Sbjct 10224 ACACGTTTCATAAACAAGTCGGGTATCCACAAAGCATAGAAAAGATCTCTGGCTCTGTGC 10283 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGT 38136 ||||| || || || || |||| | ||| || || ||||| | ||||| || Sbjct 10284 TCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAGGC 10343 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || | |||||| | | || || || | ||| |||| ||||||| || ||| | | Sbjct 10344 TCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAACGGGCC 10403 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 || ||| | | || | ||| ||||| | |||||| || ||||||| | ||| Sbjct 10404 ACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCGTTAGTGCCGTCA 10463 Query 38257 ATATAAGTACCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTT 38314 || |||| |||||||||| || | | | || | || || ||||| || || Sbjct 10464 ATGGAAGTGCCCTTAGCTCTAATGCAGTGCACAT--TTATGCCAATACCACCCGCTGATT 10521 Query 38315 TTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTA 38374 | || || | || ||||||| | | | || ||||| || ||| || || | Sbjct 10522 TGGAAATCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGAATCGGCCACCA 10581 Query 38375 TTGGTAGTATAAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTA 38433 | | | | || || |||| || || | || | || |||| ||| |||||| Sbjct 10582 TGGTCAACAAGAAGCATGACGACAACTGCGGTCTATTG-GTAGCGGCCGCAAACAATGTA 10640 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCT 38493 || || ||||| | || | || ||||| ||||||| ||||| || | ||| Sbjct 10641 GGTGAAGCATGAGTAAAATAACGCTCAGACAACAAATTATAAGTTTCAATAGCCGAATCA 10700 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATT 38553 |||||| | || || ||||||| || ||| ||||||| |||||| |||||||| || | Sbjct 10701 ATATCATCTCCATGTATACCTATAGCTACTCTCATTAACATATGCTGTGGTCTCTCAACA 10760 Query 38554 ATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTT 38597 || ||| |||| ||| || | ||| ||| | || | ||| || Sbjct 10761 ATCTTACCATTCATTTTCAGCAAATAAGATCTCTCCAGTGTCTT 10804 >seq74052 Length=11856 Score = 196 bits (216), Expect = 5e-45 Identities = 460/690 (67%), Gaps = 7/690 (1%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || |||||||| || | ||||| || ||||||||| ||||| | || || Sbjct 5452 ATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCTATCAAATTGAC 5511 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 || | |||| |||| | || || | ||| || || ||||| || |||| || | Sbjct 5512 GGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTGATAATTTCAAT 5571 Query 11584 TATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACA 11643 || ||| | || | |||| ||||||||||||||||| |||||||||||| Sbjct 5572 AATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACCGCAAAATCACA 5631 Query 11644 ATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCC 11703 ||||||||| || || | || | |||||| || ||||| | || ||||| | || Sbjct 5632 ATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCAGGCATAAGACC 5691 Query 11704 TCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGC 11763 ||||| |||| ||| || || | ||||| ||| ||||| || ||||||||||| Sbjct 5692 ACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAGAAAATACCCTCCACAGC 5751 Query 11764 TGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA-GATATCCATTTTCTGGC 11820 ||||| || | | | ||| ||| | || | || | | || ||||| | || Sbjct 5752 AGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCGAGGAAATCCAAGCCATAGC 5811 Query 11821 CCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTT 11880 ||||||||| || || || ||| ||||| || || ||||| | || | | Sbjct 5812 CCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAAAGAGAT--AATCA 5869 Query 11881 TTCT--ATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 || ||| | | ||| |||| |||| | |||||||||||| || || | | Sbjct 5870 CGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAGTGTACA 5929 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACA 11998 |||||||| || ||||| || ||||||||||| |||||||||| | ||||| || Sbjct 5930 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTCTTGG 5989 Query 11999 TAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGT 12058 | || | ||| | | ||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 5990 GAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAGCAAAGAAAGCTAGA 6049 Query 12059 ATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTT 12118 | |||| || || | ||| | | || | | | ||||| || ||||| Sbjct 6050 ACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTTTCCCAGTCGGAATTGTCTTTG 6109 Query 12119 GATAAATCTACTTCTTCAACGGTCCAAAAA 12148 || | ||| |||||||| || ||||||||| Sbjct 6110 GAAAGATCCACTTCTTCTACAGTCCAAAAA 6139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467985557238000