Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9860 219 4e-52 seq82145 113 4e-20 seq10127 102 8e-17 seq43370 98.7 1e-15 seq10922 84.2 2e-11 >seq9860 Length=13996 Score = 219 bits (242), Expect = 4e-52 Identities = 850/1319 (64%), Gaps = 44/1319 (3%) Strand=Plus/Plus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGT 153131 |||||||| | ||||| |||||||| |||||||| | | ||| | ||||| Sbjct 9336 TTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTGGAGGTGTACGGT 9395 Query 153132 TCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACA 153191 ||||| || || ||||| || ||||||||||||| || || |||||| || | Sbjct 9396 TCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATGGGGGCTAAT 9455 Query 153192 AGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCAT 153251 ||||| ||||| |||| || |||| | || ||| |||||| | |||||||| ||| Sbjct 9456 AGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCTGACCAGTTCCAC 9515 Query 153252 AACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTA 153311 || || ||| | |||||||| ||||||||| | ||| || | || || | Sbjct 9516 AAGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCCTTACTTACTGGACAG 9575 Query 153312 CCGGCAAACGTGCTATACG-GC--TCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGC 153368 |||| | | || ||| | || || | || |||| || |||| || || | Sbjct 9576 CCGGGATAAGTTTCATATGTGCCATCTTTTTC---GGCCAATTCACAACTAGCTTCCAAT 9632 Query 153369 GCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACG 153428 ||| ||| ||| | ||||||| ||||||||| || | |||| || || ||| | Sbjct 9633 GCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGCCTTTTCACTCTCA 9692 Query 153429 TACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGA 153488 || || |||| | | || | |||||| ||||| |||| || ||||| || ||| Sbjct 9693 TAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATGCCAATAGGA 9752 Query 153489 CGATGGCGCATATTAGAtttttttGCAGCTTCA---ACAGGATAGAAATTGCGGTCGATA 153545 ||||| |||||||| ||||| | ||| ||| | ||||| | || |||||| Sbjct 9753 CGATGACGCATATTGGATTTCCT---AGCCTCAGGCAAGGGATAATAGTTAATGTCGATG 9809 Query 153546 ATTTTATTTAAACTAATCACGACATG--TTTCACCACAGAATGCAACAGTTGAAAATCAA 153603 ||||| || | | | | | ||| ||| ||| | ||| || |||||||| Sbjct 9810 ATTTTGTTGAGATTCTT--GGTAATGACTTTAGTGACATTTTTCAATTTTTTAAAATCAA 9867 Query 153604 A---CGTTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAG 153660 | | || | ||| | | | || | ||| || || ||||| || |||||||| Sbjct 9868 AGGTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAACGGCTA 9927 Query 153661 TTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGC 153720 | || || ||||| |||||| ||| || || | ||||| |||||||| || || || Sbjct 9928 TCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAATGGTGC 9987 Query 153721 CGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGC 153780 | ||| || || ||||||||||| || || || || || | ||| || || || | Sbjct 9988 CAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGGGAGTAC 10047 Query 153781 CGGTTTCGGCTTGAATTTCTATAATAGTACGCATCAATGTGACCGCGGGCATTTGATCGC 153840 ||||||| |||| ||| || |||| | | ||| | | | | | |||| | Sbjct 10048 CGGTTTCTACTTGGGCTTCAATTATAG--CAAACCAAAGAGCCTGAG---CCTTGACAGT 10102 Query 153841 GAAACTGGC----CCTT-GTCTTCGTAGTGTTTGTACCAGTATTCAAACTCATCA--CCA 153893 | | |||| |||| | ||| || | | ||| | | ||| || || ||| ||| Sbjct 10103 GCGATTGGCCTTACCTTCTTTTTCATACTTGGTATACAATTCTTCGAATTCCTCACCCCA 10162 Query 153894 AACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCT 153953 ||| || | || ||||||||| || |||||||| || ||||| ||||||||| Sbjct 10163 AAC--ATCCTGCAGACCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATTTTCT 10220 Query 153954 TGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTC 154013 | || || |||||| | ||||| | ||| | || | | || || | ||| | Sbjct 10221 TCCACACGTTTCATAAACAAGTCGGGTATCCACAAAGCATAGAAAAGATCTCTGGCTCT- 10279 Query 154014 GTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCA 154072 ||| ||||| |||| ||||| | | || | || | || || ||||||| Sbjct 10280 GTGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCA 10339 Query 154073 CGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTG---CCGCCCTGATTTACGTGACG 154129 || |||| |||| || || || || ||| || ||||||| || | ||| Sbjct 10340 AGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAACG 10399 Query 154130 CACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGA 154189 ||| |||||| || |||| |||||| |||| |||||| | | ||| ||||| || Sbjct 10400 GGCCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCGTTAGTGCC 10459 Query 154190 TTTAAT---CTTGCTGTTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCC 154246 | ||| ||| || ||| || || || || |||| |||||||| || | Sbjct 10460 GTCAATGGAAGTGCCCTT---AGCTCTAATGCAGTGCACATTTATGCCAATACCACCCGC 10516 Query 154247 GTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCACGAATGCTATCGCT 154306 |||||| |||||||| || | | || || || | ||||| ||| |||| Sbjct 10517 TGATTTGGAAATCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGAATCGGC 10576 Query 154307 TTCCATGGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACA 154365 |||||||||| | ||| ||||| || |||||| | || |||| ||||||| Sbjct 10577 CACCATGGTCAACAAGAAGCATGACGACAACTGCGGTCTATTGGTAGCGGCCGCAAACA 10635 >seq82145 Length=1636 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || |||||||| || ||||||| || || |||||||||||||| || ||| Sbjct 1625 CCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAT 1566 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||| |||||||| | |||| ||| || ||||| || || Sbjct 1565 AAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 1506 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | || || | || || ||| Sbjct 1505 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 1446 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| ||||| |||||||| Sbjct 1445 TCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 >seq10127 Length=8452 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || || || | || ||||| ||||| ||||| || || Sbjct 6905 GCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 6964 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| | ||||| || ||| |||||| |||||||||||| ||||| Sbjct 6965 CAAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGG 7024 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || || | | ||| | ||||| | ||||| || Sbjct 7025 AATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGAC 7084 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || |||||||| || |||||||| ||||||||| Sbjct 7085 TTCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCATA 7133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || |||||||| ||||| || | || || || || || ||||| || || Sbjct 7134 CCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 7193 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | ||||| | ||||| || || |||||| |||||||||||| || || Sbjct 7194 AGGGTGCGTCCA-TCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGG 7252 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || |||||| || | | || | || |||| || || || Sbjct 7253 AATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAAC 7312 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || ||||||||||| ||||| ||||| || |||||| Sbjct 7313 TTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCATA 7361 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||||||||| ||||| | ||||| || ||||| ||||| || || Sbjct 7680 CCACCACGTAAACGCAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCGAA 7739 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | |||||||||||| ||||||||||||| || || ||||| Sbjct 7740 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAGGA 7799 Query 139658 ATGCCTTCTTTGTC 139671 || ||||| || || Sbjct 7800 ATACCTTCCTTATC 7813 >seq43370 Length=3724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| ||||| || ||| || |||| ||||| | ||||||||| Sbjct 2558 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCA 2499 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| |||||| ||||| || || || ||||||||||| |||||| || Sbjct 2498 GCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCTTG 2439 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||||| ||||| || || | ||| | || || || || || ||| Sbjct 2438 ACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTACCAGTTAAAGTT 2379 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 2378 TTGACGAAGATCTGCAT 2362 >seq10922 Length=8781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| |||||||| | | || || |||| ||| || ||||| Sbjct 3007 CCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAG 3066 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||| ||||| | |||| |||||| ||||| || || Sbjct 3067 AGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 3126 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | ||||| | ||||| || Sbjct 3127 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGAC 3185 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| || || | ||||| || || || ||||| Sbjct 3186 CTCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495493061340000