Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq74052 210 2e-49 seq14616 89.7 5e-13 >seq74052 Length=11856 Score = 210 bits (232), Expect = 2e-49 Identities = 477/711 (67%), Gaps = 16/711 (2%) Strand=Plus/Plus Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 ||| | ||| || | ||| || | ||| || || |||| ||||| || | ||||||||| Sbjct 5437 TTCCACTAGCAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCAT 5496 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 ||||| | || || || | || || | ||||||| ||| || ||| || || Sbjct 5497 GCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTC 5556 Query 13811 TTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13870 | ||||| |||| |||| | ||| | | | | ||||||||| ||||| Sbjct 5557 GGTGATAATTTCAATAATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACATTAA 5616 Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||||||||||||||| | |||||||| | ||| | ||| || || ||||| | Sbjct 5617 TACCGCAAAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAG 5676 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACCCGGAAAAG 13988 || ||||| | || ||||| |||| ||| || || | ||||| || | | | ||| Sbjct 5677 ACCAGGCATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTG--AAG 5734 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || ||||| || |||||||| || || | ||||| ||||| || ||| Sbjct 5735 AAAATACCCTCCACAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCGAG 5794 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 || ||||| ||||||| |||| || |||| | ||| |||||||| ||| Sbjct 5795 GAAATCCAAGCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCA 5854 Query 14109 TTAAATAAATATTC---CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 ||||| | ||| || || ||| | | ||| ||| || ||||||| || | ||| Sbjct 5855 TTAAAGAGATAATCACGCTGCTCGCGA-TCCTT--AATATAACTATCAATTAGAATACTA 5911 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||||||||||||||| |||||||| || || || || ||||| || || | || || Sbjct 5912 TACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCT 5971 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | ||||||||| | | || | ||| | | ||||||||| || || ||||| | Sbjct 5972 GTAACTTGTACTTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAA 6031 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTT 14342 || ||||| || || | | | | ||| | | || |||||||| ||||| || Sbjct 6032 GCAGCAAAGAAAGCTAGAACATGTGAAAT---GAAATGACGTTCATTGTCGGTGAGTCTT 6088 Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 | ||| ||||| || || |||||||| ||||| || || ||||||||| Sbjct 6089 TCCCAGTCGGAATTGTCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAA 6139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| ||||||||| |||||||||||| || || | | || || | |||| Sbjct 5203 TAAAAATCGGCATCTAATGTAAAAACATTATCTAAACGGTGAGTAGTTACACCTAATTTT 5262 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||||| |||| | ||||||||| |||||||| || |||| || || ||||| Sbjct 5263 TGATATTCACCAACTTTACGTTCAAAGAAATTAGTTTTGCCATCCAAAGAGATCATTTCC 5322 Query 13644 ATAAAATCAAATGGATTT 13661 ||||| || |||||| Sbjct 5323 ATAAAGGGGAAGGGATTT 5340 >seq14616 Length=5376 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/110 (79%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 139044 TGGTGGTGTTTTACATACAAAATTTTTAATTTCGGATGAGTTAAATGCATATATT--GGA 139101 |||||||||||||||||||||||||| ||||| ||| | ||| ||| |||| || Sbjct 1448 TGGTGGTGTTTTACATACAAAATTTTGGATTTCCGATAA--CAAACACATTTATTTGGGC 1391 Query 139102 AGCGCTAATATGGATTGGAGGTCTCTATCTCAAGTTAAAGAACTTGGTAT 139151 || || |||||||| ||||| ||| || | || ||||||||| | ||||| Sbjct 1390 AGTGCCAATATGGACTGGAGATCTTTAACACAGGTTAAAGAATTGGGTAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479175863055000