Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq74052 181 1e-40 >seq74052 Length=11856 Score = 181 bits (200), Expect = 1e-40 Identities = 459/694 (66%), Gaps = 12/694 (2%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 ||| || | ||| || || |||| ||||| || | ||||||||| ||||| | || || Sbjct 5452 ATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCTATCAAATTGAC 5511 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 || | || || | ||||||| ||| || ||| || ||| | ||||| | Sbjct 5512 GGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTGATAATTTCAAT 5571 Query 13614 AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACA 13673 ||| | || | ||| | | | | ||||||||| ||||| |||||||||||| Sbjct 5572 AATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACCGCAAAATCACA 5631 Query 13674 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCC 13733 ||| | |||||||| | ||| | ||| || || ||||| | || ||||| | || Sbjct 5632 ATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCAGGCATAAGACC 5691 Query 13734 TCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGC 13793 ||||| |||| ||| || || | || || || ||||| || ||||| || || Sbjct 5692 ACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAGAAAATACCCTCCACAGC 5751 Query 13794 AGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGC 13853 |||||| || || | ||||| ||||| || ||| || ||||| |||| Sbjct 5752 AGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCGAGGAAATCCAAGCCATAGC 5811 Query 13854 CCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC--- 13910 ||| |||| || |||| | ||| ||||| || ||||| || | || || Sbjct 5812 CCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAAAGAGATAATCACG 5871 Query 13911 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 || ||| | | ||| ||| || ||||||| || | ||||||||||||||||||| Sbjct 5872 CTGCTCGCGA-TCCTT--AATATAACTATCAATTAGAATACTATACATTTCAGAGTGTAC 5928 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030 ||||| || || || || || ||||| ||||| | || |||| |||||| || Sbjct 5929 ATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTCTTG 5988 Query 14031 GTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 | | || | ||| | | |||||||| ||||| ||||| ||| ||||| || || | Sbjct 5989 GGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAGCAAAGAAAGCTAG 6048 Query 14091 TATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTTCCAATCGGCTAAATC 14147 | | | ||| | | || |||||||| ||||| ||| ||| |||| || Sbjct 6049 AACATGTGAAAT---GAAATGACGTTCATTGTCGGTGAGTCTTTCCCAGTCGGAATTGTC 6105 Query 14148 CTTAGAAAGATCTACTTCATCAACTGTCCaaaaa 14181 || |||||||| ||||| || || ||||||||| Sbjct 6106 TTTGGAAAGATCCACTTCTTCTACAGTCCAAAAA 6139 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| ||||||||| |||||||||||| || || | | || || | |||| Sbjct 5203 TAAAAATCGGCATCTAATGTAAAAACATTATCTAAACGGTGAGTAGTTACACCTAATTTT 5262 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||||| |||| | |||||| || |||||||| || |||| || || ||||| Sbjct 5263 TGATATTCACCAACTTTACGTTCAAAGAAATTAGTTTTGCCATCCAAAGAGATCATTTCC 5322 Query 13432 ATAAAATCGAATGGATTT 13449 ||||| ||| |||||| Sbjct 5323 ATAAAGGGGAAGGGATTT 5340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478037974203000