Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq9860 203 3e-47 seq82145 141 9e-29 seq10127 111 2e-19 seq43370 104 2e-17 seq10922 89.7 5e-13 >seq9860 Length=13996 Score = 203 bits (224), Expect = 3e-47 Identities = 735/1135 (65%), Gaps = 34/1135 (3%) Strand=Plus/Plus Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGT 156553 |||||||| | ||||| ||||||||||||||||| | | ||| | ||||| Sbjct 9336 TTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTGGAGGTGTACGGT 9395 Query 156554 TCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACA 156613 ||||| || || |||||| || ||||||||||||| || || |||||| || | Sbjct 9396 TCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATGGGGGCTAAT 9455 Query 156614 AGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCAT 156673 ||||| ||||| |||| || | || | || || ||||||| |||||||| ||| Sbjct 9456 AGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCTGACCAGTTCCAC 9515 Query 156674 AACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTA 156733 || || ||| ||||||||| ||||||||| | ||| || | || || | Sbjct 9516 AAGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCCTTACTTACTGGACAG 9575 Query 156734 CCGGCAAACGTGCTATAAG-GC--TCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGC 156790 |||| | | || ||| | || || | | |||| ||| |||| || || | Sbjct 9576 CCGGGATAAGTTTCATATGTGCCATCTTTTTC---GGCCAATTCACAACTAGCTTCCAAT 9632 Query 156791 GCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACG 156850 || ||| ||| | |||||| ||| |||| ||| || | || || || ||| | Sbjct 9633 GCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGCCTTTTCACTCTCA 9692 Query 156851 TACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGA 156910 || || |||| | || || | |||||| ||||| |||| || ||||| || ||| Sbjct 9693 TAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATGCCAATAGGA 9752 Query 156911 CGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATCAATA 156967 ||||| |||||||| ||||| | || ||| | || || | || || || Sbjct 9753 CGATGACGCATATTGGATTTCCT---AGCCTCAGGCAAGGGATAATAGTTAATGTCGATG 9809 Query 156968 ATTTTATTCAAACTATCCACTACATG--TTTGACCACAGTGTGCAATAGTTGAAAATCAA 157025 ||||| || | | | | || ||| ||| ||| | | |||| || |||||||| Sbjct 9810 ATTTTGTTGAGATTCT-TGGTA-ATGACTTTAGTGACATTTTTCAATTTTTTAAAATCAA 9867 Query 157026 AAGTATCATTAT----TGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCA 157081 | || | || | ||| | | |||| | ||| || || || | |||||| ||||| Sbjct 9868 AGGTCT-TTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAACGGCT 9926 Query 157082 GTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAAT 157141 | || || || || |||||| ||| || || | ||||| |||||||| || || Sbjct 9927 ATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAATGGTG 9986 Query 157142 CCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTG 157201 || ||| || || |||||||||||||| || || || || ||||| || || || Sbjct 9987 CCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGGGAGTA 10046 Query 157202 CCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATTTGCTCG 157261 |||||||| |||| ||| || | | || | || | | | | || ||| | Sbjct 10047 CCGGTTTCTACTTGGGCTTCAAT--TATAGCAAACCAAAG--AGCCTGAGC-CTTGACAG 10101 Query 157262 CGAAACTGGCCTT--TATCCTCGTAATGTTTG---TACCAGTATTCAAAGTCATCACCAT 157316 | | ||||||| || | | || ||| ||| | | ||| || || ||||| Sbjct 10102 TGCGATTGGCCTTACCTTCTTTTTCATACTTGGTATACAATTCTTCGAATTCCTCACCCC 10161 Query 157317 ACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTT 157376 | ||| | || ||||| | || ||||||||||| ||||| ||| ||||||| Sbjct 10162 AAACATCCTGCAGACCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATTTTCTT 10221 Query 157377 CAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGG 157436 | || ||||||||||| | ||||| | ||| ||||| | | | ||| | ||| || Sbjct 10222 CCACACGTTTCATAAACAAGTCGGGTATCCACAAAGCATAGAAAAGATCTCTGGCTCTGT 10281 Query 157437 TGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACG 157496 ||||| |||| ||||| | | |||| || | ||| || ||||||| | Sbjct 10282 GCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAAG 10341 Query 157497 GTTCAACGTACACTGCTTGGGCTCCTTTTCGCTTG---CCACCTTGATCCACGTGACGCA 157553 | || | || | || ||| || || ||| ||||| ||||| || | ||| Sbjct 10342 GCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAACGGG 10401 Query 157554 CCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608 ||| ||| ||||| || | |||||||||| ||| || | | ||||||||| || Sbjct 10402 CCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCGTTAGT 10456 >seq82145 Length=1636 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || ||||| || || ||||| | |||||||||||||||||| || ||||| Sbjct 1398 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGA 1339 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| | |||||| | |||||| |||||| | |||| |||||| ||||| || || Sbjct 1338 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 1279 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| |||||| ||| | | ||| | || || | || || || Sbjct 1278 GATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 1219 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || ||||| |||||||| || || || |||||||| Sbjct 1218 CTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || |||||||| || || |||| || ||||||||||| |||||||| ||| Sbjct 1625 CCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAT 1566 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | || |||||||| | |||| ||| || ||||| || || Sbjct 1565 AAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 1506 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||| | | ||| | || |||| ||||| || Sbjct 1505 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 1446 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || |||||||| ||||| |||||||| Sbjct 1445 TCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 >seq10127 Length=8452 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || ||||| | || || || ||||| |||||||| || Sbjct 6905 GCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 6964 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| | |||||| || ||| |||||| |||||||||||| ||||| Sbjct 6965 CAAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGG 7024 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || || || || | | ||| | ||||||| || || || Sbjct 7025 AATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGAC 7084 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | || || |||||||| || |||||||| ||||||||| Sbjct 7085 TTCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCATA 7133 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || |||||||| |||||||| | || ||||| || || |||||||| || Sbjct 7134 CCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 7193 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| | |||||| || || |||||| |||||||||||| || || Sbjct 7194 AGGGTGCGTCCA-TCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGG 7252 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||||| || | | || | || || | ||||| || Sbjct 7253 AATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAAC 7312 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | || ||||||||||| ||||| ||||| || |||||| Sbjct 7313 TTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCATA 7361 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||||||||||||| || || | |||||||| ||||| |||||||| || Sbjct 7680 CCACCACGTAAACGCAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCGAA 7739 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||||||||||||| ||||||||||||| || || ||||| Sbjct 7740 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAGGA 7799 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| || || Sbjct 7800 ATACCTTCCTTATC 7813 >seq43370 Length=3724 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | || ||||| ||||| |||||||| ||| | Sbjct 2588 CCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 2529 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | |||||||||||| |||||| |||||| ||||| || || Sbjct 2528 AAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 2469 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| || | | ||| | ||||| | || || ||| Sbjct 2468 ATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACT 2409 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || || ||||| ||||| || ||||| Sbjct 2408 TCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10922 Length=8781 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| ||||| || | | ||||| |||| || |||||||| Sbjct 3007 CCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAG 3066 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||| ||||| | |||| |||||| ||||| || || Sbjct 3067 AGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 3126 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | ||| | ||||||| || || || Sbjct 3127 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGACC 3186 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || | ||||| || || || ||||| Sbjct 3187 TCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506430858114000