Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9860 96.9 5e-15 seq19541 93.3 6e-14 >seq9860 Length=13996 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 98105 CATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGAC 98164 ||| || || ||||||||||||||| | | || |||||||| | ||| | |||| Sbjct 9081 CATAGATCAAAGTCAATCGTTCAATATACATGTGGCCGAGCCAAATTACGGCAAATTGAC 9022 Query 98165 TTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAAC 98224 || ||||| || || || ||||| ||| | ||||| |||||||| ||| ||||||| Sbjct 9021 CTCCATACATTTCTATGCCTGGAAATCAGGCTTAAAGACCGGCATGTATTATTTGAGAAC 8962 Query 98225 AAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 |||| | || ||||||| || | |||||| || || Sbjct 8961 AAAGCCAGCAGCCAATGCTATTCAATTTACCGTAGA 8926 >seq19541 Length=14449 Score = 93.3 bits (102), Expect = 6e-14 Identities = 210/311 (68%), Gaps = 20/311 (6%) Strand=Plus/Minus Query 127364 CATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTG 127423 |||| |||| ||| ||||||| |||||| |||||||| ||||| |||||| |||| | Sbjct 11100 CATAATCGATGAGACCAGTCTTAGGATCTACCTTGTAGGGCATCGATTCGAAGAAGATGG 11041 Query 127424 ATGTAGCGGACA--CGTT-----GCGG-----AATCCGTGCGTCAGGTGGCCTCCGTCGG 127471 | || || || | |||| || | || || || |||| || || || |||| Sbjct 11040 AAGTGGCTGAAATACGTTTGTTGGCAGTCATGAAGCCATGAGTCAAATGTCCACCATCGG 10981 Query 127472 GCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGT 127531 ||| || | ||||| || | | | || |||| | | |||||||| |||| |||| Sbjct 10980 GCAAGTCCAAACCCATAATGCGATCATGGGGTTGCAACAAACCAGTGTAGACGGAGAAGT 10921 Query 127532 TGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCCCATTCGGACTCG---TTCAAAT 127588 | || ||||| ||||| || |||||| || |||||||| ||| ||||||| Sbjct 10920 TAGCTGGAGAGCCAGAGTAGGGCTGTACATTTACACCCCATTCT---TCGGGATTCAAAT 10864 Query 127589 TGAACG-CTCTGAGACATCGCTGCTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTA 127647 |||| | || || || || | || || | || ||| || ||| || || | ||| Sbjct 10863 TGAATGTTTCCAAGGCA-CGTTTTTGGGCCAACACTTCAATTTTATCAATGAATTGATTA 10805 Query 127648 CCACCATAGTA 127658 || || ||||| Sbjct 10804 CCGCCGTAGTA 10794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740206287177000