Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq82145 147 2e-30 seq43370 129 4e-25 seq10127 123 2e-23 seq10922 116 3e-21 >seq82145 Length=1636 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | || || || ||||||||||| |||||||| |||||||| ||| | Sbjct 1625 CCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAT 1566 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| || || || |||||| | |||||||| ||||| || ||| Sbjct 1565 AAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 1506 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| || ||| ||||||| ||||| | ||| || Sbjct 1505 ATACCTTCTTTGTCTTGGATTTTAGCT-TTAACATTTTCTATAGTATCCGAAGGTTCAAC 1447 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| |||||||| || | ||||| || ||||||||||| Sbjct 1446 CTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 Score = 141 bits (156), Expect = 7e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||| | ||| || ||||| | || || ||||||||||| || ||||| Sbjct 1399 TGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAG 1340 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | | ||||||| |||||||||||||| | |||||||||||||| || || Sbjct 1339 ACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 1280 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | |||||||| ||||| |||||| ||| || ||| |||| || |||||| | || Sbjct 1279 GGATTCCTTCCTTGTCTTGAATTTTAGCT-TTAACATTTTCAATAGTATCGGAAGGCTCA 1221 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| || |||| || || ||||| |||||||| Sbjct 1220 ACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 >seq43370 Length=3724 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||||| || ||||| |||||||| ||| | | | | ||||| Sbjct 2570 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 2511 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | |||||||||||||| || || || ||||||||||| Sbjct 2510 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 2451 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| ||||| ||| | || || || ||||||||||||||| Sbjct 2450 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 2391 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | |||||| || || || ||||| Sbjct 2390 CCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10127 Length=8452 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | || |||||||| |||||||| || || || |||||||| || Sbjct 7134 CCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 7193 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| ||||||||||| ||| | ||||||||||| || || ||| Sbjct 7194 AGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 7253 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || ||||| ||| || | || ||||||||| | ||| || Sbjct 7254 ATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACT 7313 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || ||||| || |||| ||||| || ||||| |||||| Sbjct 7314 TCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCATA 7361 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || ||||| |||||||| || | | | | | ||||| Sbjct 6924 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCC 6983 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||||||||| || | ||||||||||| || || ||||| ||||| || || Sbjct 6984 AATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTATCCTGG 7043 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || |||| || || || | || || || ||||| ||||||||| Sbjct 7044 ATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACTTCCAAGGTGATGGTTTTA 7103 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || ||||| || ||||||||| Sbjct 7104 CCGGTCAAGGTCTTTACGAAGATTTGCATA 7133 >seq10922 Length=8781 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || ||||| || || |||| || |||| || |||||||| || | | | ||| Sbjct 3022 AATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAGAGGGTACGACCATCT 3081 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| |||||| | |||||||||||||| || |||||||||||||||||| Sbjct 3082 TCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCC 3141 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| || ||| |||| || || || || || || | |||||||| Sbjct 3142 TGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGACCTCAAGAGTAATGGTC 3201 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| |||||||| ||||| Sbjct 3202 TTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361772775517575