Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq82145 118 8e-22 seq10127 113 3e-20 seq43370 98.7 7e-16 seq10922 93.3 3e-14 >seq82145 Length=1636 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||| | ||| |||||||| | || |||||||| ||||||||||| Sbjct 1397 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGAC 1338 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| | || ||||||||||| || ||||| ||||| ||||| || || | || Sbjct 1337 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 1278 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| |||||| ||| || | ||| |||||| | ||||| || Sbjct 1277 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACC 1218 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || || ||||| ||||| ||||||||| Sbjct 1217 TCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 1170 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || | ||| | || ||||| || || ||| ||||||||||| || || ||| Sbjct 1626 ACCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGA 1567 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| || |||| ||||| || || || || || ||||| || || || || | || Sbjct 1566 TAAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGG 1507 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||||| ||| || | | | |||||| | || || || Sbjct 1506 AATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAAC 1447 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | |||||||||||||| ||||| || || || || ||||||||| Sbjct 1446 CTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 1398 >seq10127 Length=8452 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCAT 43967 || ||||||||| || ||| ||| ||||| || || || || | || || || ||| Sbjct 6920 TAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTG-CGACCAT 6978 Query 43968 CGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT 44027 | ||||||||||| || ||||| ||||| |||||||| || |||| | |||||| |||| Sbjct 6979 CTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTAT 7038 Query 44028 CTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 | || || ||||| | ||| ||| || | ||||| || || | || || | Sbjct 7039 CCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACTTCCAAGGTGATGG 7098 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||||| || ||||| || || |||||||| Sbjct 7099 TTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 >seq43370 Length=3724 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| ||| || ||||| || || || ||| || || |||| ||| Sbjct 2570 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 2511 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || ||||| ||||| || || | || | ||||||||| ||| Sbjct 2510 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 2451 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | ||| || || | ||||| || || | ||||| |||||| Sbjct 2450 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 2391 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||||||| || || || || ||||| Sbjct 2390 CCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10922 Length=8781 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||| |||||| ||||| | ||| |||| |||||||||||||| || || Sbjct 3043 TCCTTTTCAATATTGTAATCCGAGAGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAA 3102 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||| || || | || | |||||||| || ||| || |||||| | Sbjct 3103 ATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTT 3162 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||| || | |||||| || || | ||||| || ||||| |||| || || ||| Sbjct 3163 TCAATAGTGTCCGACGGCTCGACCTCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACA 3222 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 3223 AAAATCTGCAT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354379481327100