Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq82145 113 4e-20 seq43370 100 2e-16 seq10127 89.7 4e-13 seq11123 87.8 2e-12 >seq82145 Length=1636 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| | |||||||||||||||||| || ||||| || || ||| Sbjct 1382 AATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCT 1323 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 |||||||||||||| ||| |||| | | |||||||| || | ||||| ||||| Sbjct 1322 TCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCT 1263 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| ||| || | ||| || |||| ||| || |||| || |||||| Sbjct 1262 TGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 1203 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| || || ||||| |||||||| Sbjct 1202 TTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || || | ||| ||||| || || || ||||||||||| |||||||| ||| Sbjct 1625 CCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAT 1566 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| ||||||||| || || || || |||| | | ||||||||| ||| Sbjct 1565 AAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 1506 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||| || | | | || ||| |||||| Sbjct 1505 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 1446 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||| ||||| || || || ||||| || ||||||||||| Sbjct 1445 TCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 >seq43370 Length=3724 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||||| || ||||| ||||| |||||||| ||| || || | ||||||| Sbjct 2570 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 2511 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || | || | | |||||||| ||| | ||||||||||| Sbjct 2510 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 2451 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| | ||| ||| || ||||| |||||||||||| Sbjct 2450 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 2391 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAA 20214 || || || |||||||| || || ||||| | ||| Sbjct 2390 CCAGTTAAAGTTTTGACGAAGATCTGCATCTATAA 2356 >seq10127 Length=8452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || || | ||| || ||||| || || ||||| || || |||||||| || Sbjct 7134 CCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 7193 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||||||||||||||| || | || | | || ||||| ||| Sbjct 7194 AGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 7253 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || ||||| ||||| | ||| | |||| |||||| | Sbjct 7254 ATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACT 7313 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| || |||||||||||||| ||||| || ||||| ||||| Sbjct 7314 TCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 171/253 (68%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 19956 AAAATTTAAATATATTTTATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAG 20015 |||| |||||| |||| | || ||||| || | | | ||||||||| || || | Sbjct 6881 AAAAAATAAATAAATTTAGT-ATGCGCCTCCACGAAGACGTAGCACCAAATGGAGGGTGG 6939 Query 20016 ATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCAT 20075 | || ||||| |||||||| || || ||| | |||||||||||||||||| ||| Sbjct 6940 ACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCAA 6999 Query 20076 AAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCT 20135 | || | | || ||||| || | ||||| || || || || || || | Sbjct 7000 AGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACGT 7059 Query 20136 GGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGA 20195 ||| || || ||| || ||||| ||| |||||||| |||||||| || || | Sbjct 7060 TTTCAATAGTGTCCGAAGGCTCGACTTCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTA 7119 Query 20196 CAAAAATTTGCAT 20208 | || |||||||| Sbjct 7120 CGAAGATTTGCAT 7132 >seq11123 Length=4519 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 23595 GCGTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGA 23654 || |||| |||||| || || ||| ||||||||||||||||| | || | Sbjct 3046 GCATGTTGTTCCCAAGGATCATCGTCTACATCCCAGTCTTTGAGGCCACTCAGACATTCG 2987 Query 23655 AAACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCT 23714 |||||| || || ||||| || | ||||| ||||| ||||| |||| || ||| Sbjct 2986 AAACATACAACACTATCACCAACACCCTTATAATAGAAACCAGCTTCGGCTAGTTCCTCA 2927 Query 23715 GGCTTTTGTTTTAAACTAACCGGCCAATCCACAAAAGTTTTTAAACGT 23762 ||| ||||||||| |||| |||||| || |||||| | ||||||| Sbjct 2926 GGCCTTTGTTTTATACTACGCGGCCATTCAGCAAAAGATGCTAAACGT 2879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419116354323075