Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq74052 179 3e-40 >seq74052 Length=11856 Score = 179 bits (198), Expect = 3e-40 Identities = 482/725 (66%), Gaps = 14/725 (2%) Strand=Plus/Plus Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027 ||||| | || ||| | || || ||||| |||||||| | | ||| || | ||| ||| Sbjct 5435 AATTCCACTAGCAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTC 5494 Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087 || ||||| || || || |||| ||| ||||| | || | || ||| || | || ||| Sbjct 5495 ATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCT 5554 Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAATGG-AGGATTTGATAGATGCTTAAACAT 13146 ||| | | || || | ||| | || | | ||| | | | | | ||| |||||||| Sbjct 5555 TCGGTGATAATTTCAATAATT-CTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACAT 5613 Query 13147 CA-TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATG 13205 | ||| ||||||||||| || || || ||||| | || | || || || |||| Sbjct 5614 TAATACC-GCAAAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATG 5672 Query 13206 TTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA--CGAACCCGa 13263 | ||||| |||||||| || ||||| || | ||| || || | ||||| | | || Sbjct 5673 TAAGACCAGGCATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGA 5732 Query 13264 aaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA--CTATTT 13321 | |||||| || || || || ||||| || || | | ||||||| | || | |||| Sbjct 5733 AGAAAATA--CCCTCCACAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTT 5790 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTC 13380 | ||||| | ||||| | || || | ||||| || | |||| |||| Sbjct 5791 CGA--GGAAATCCAAGCCATAGCCCAATCAGCCTTACGCTTAACAGCCG-GCATAGTTTC 5847 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || || ||||| | ||||| | || | || ||||||| |||| || | | Sbjct 5848 AATGGCATTAAAGAGATAATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAAT 5907 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 ||||||||||| || || | ||||||||| || |||||||| ||||| ||||| | || Sbjct 5908 ACTATACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGC 5967 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 ||||| || || ||||| | | || | ||| | | ||||| || || || || || Sbjct 5968 CTCTGTAACTTGTACTTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATC 6027 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT 13620 ||||||||| ||||| || | || ||| || | ||| || || | | | Sbjct 6028 GGAAGCAGCAAAGAAAGCTAGAACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCT 6087 Query 13621 TAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAAC 13680 | ||| || | | ||||| || | ||| || || || || |||||||||||||| | Sbjct 6088 TTCCCAGTCGGAATTGTCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTTC 6147 Query 13681 AGCCT 13685 |||| Sbjct 6148 GGCCT 6152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430498767039150