Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq76374 154 2e-32 seq8915 104 3e-17 seq35888 98.7 1e-15 >seq76374 Length=5101 Score = 154 bits (170), Expect = 2e-32 Identities = 270/391 (69%), Gaps = 24/391 (6%) Strand=Plus/Minus Query 164729 TTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT---------AATA 164779 |||| | |||||||| || ||||| |||||||| |||||||| | |||| Sbjct 3373 TTATAATCTTTGATGAAATCGATGCCATTTGCAAACAACGTGGTTCTGTGGCCGGCAATA 3314 Query 164780 TTATT---CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836 | | |||||| | ||||| ||||| ||| | | ||||| ||||| |||||| | Sbjct 3313 GTGGTGTCCATGATACTGTGGTAAATCAATTGTTAGCCAAAATCGATGGCGTAGAACAAT 3254 Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896 ||||||| |||||| || | |||||||| || || | |||| | |||||||| || |||| Sbjct 3253 TAAATAACATTTTAGTTATTGGTATGACTAATCGTCGTGATATGATTGATGACGCCTTAT 3194 Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCC 164956 | || || ||||| || ||| | |||| ||||| | |||||| | || | || || Sbjct 3193 TGCGTCCCGGTCGTTTGGAAGTACAAATGGAAATTAGTTTACCCAATGAACAGGGTCGTG 3134 Query 164957 TTCAAATTTTAAAAGTTCATGTGGCTAAA---ATG---AAATCCTGTGATATATTATCTC 165010 | ||||||||||| |||| | ||| ||| ||| | ||| | | | | Sbjct 3133 TGCAAATTTTAAATATTCA---CACCAAACGCATGCGTGAATTC---AATAAAATTGCCC 3080 Query 165011 CCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAG 165070 | ||||| |||| || | || ||||| |||||||| | ||||||||| ||||| | Sbjct 3079 CAGATGTTGATTCCAAGGAGATTGCTGCTCTTACTAAAAACTTTAGTGGTGCCGAATTGG 3020 Query 165071 AGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 | || || ||| | || ||||| || || || Sbjct 3019 AAGGTTTGGTACGTGCTGCTCAGTCTACAGC 2989 Score = 95.1 bits (104), Expect = 1e-14 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 164446 ATTTTCAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGC 164505 || || ||| |||||||||||||| || |||| || | || || | | ||| Sbjct 3721 ATCTTTAGAAGAGCATTTGCTTCTCGAGTCTTTCCACCAGAGTTGGTAGAACAGCTGGGC 3662 Query 164506 TGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATG 164565 || || || |||| || ||||||||| |||| || || ||| |||||||| || ||| Sbjct 3661 TGCAAGCACGTAAAGGGTATTTTATTATATGGTCCACCCGGTACTGGTAAAACTTTGATG 3602 Query 164566 GCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCT 164622 || || |||| ||| | |||||| | || || ||| |||||||||||||| Sbjct 3601 GCCCGTCAAATTGG-CAATATGTTAAATGCCAGAGAGCC--TAAGATTGTTAATGGTCCA 3545 Query 164623 GAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAG 164682 | | ||| | |||||||| ||||| |||||||| || | ||| || ||| || Sbjct 3544 CAGATTTTGGATAAATATGTGGGTGAATCAGAAGCCAACATCAGACGTTTATTTGCCGAA 3485 Query 164683 GCTGAAGAAGAA 164694 ||||| || ||| Sbjct 3484 GCTGAGGAGGAA 3473 >seq8915 Length=10834 Score = 104 bits (114), Expect = 3e-17 Identities = 204/300 (68%), Gaps = 14/300 (5%) Strand=Plus/Plus Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATC 6758 ||||| ||| ||||| | | | |||||||||||||||||| ||||| || || | Sbjct 9000 TGGATAAGGTTTATAGCCGACAATTTCAAAATCTTCAAATTTGAAATCCTCTATATCCTT 9059 Query 6759 AGACttt---tttttt----AATATTACAACAGGTGAAGGTTTTATTGATCGAGTTAATT 6811 | |||| |||| | ||| | | ||| |||||| || ||| || Sbjct 9060 A-ACTTCACGTTTTATGAGCAATTTAGGGAAAGGACGAGGTTTA------CGTTTTAGTT 9112 Query 6812 GTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAA 6871 |||| || | || || ||||||| ||||| ||| | ||| || |||||||||| Sbjct 9113 GTTCCTTCAAAGGTTCAATATGATTCTTATAAACATGGGTATCACCAGTGGTATGAATAA 9172 Query 6872 ATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAG 6931 | || |||||||||| | | | |||||||| | |||||||| ||| ||||| |||| Sbjct 9173 AATCTCCTGGTTTCAAACCGGTAATATGAGCAATCATATATGTTAGTAAAGCATATGAAG 9232 Query 6932 CTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATA 6991 ||| |||||| || || || | ||||| || || | |||||| | ||||| |||| Sbjct 9233 CTATATTAAATGGCACTCCAAGACCCATGTCAGCACTGCGTTGATACAACTGACATGATA 9292 >seq35888 Length=10298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414 ||||| |||| ||||| ||||||||||| | | |||||| || || |||||||| Sbjct 2252 ATACCGCAAATTGGTGACAAGTTTGCTTCGCGTCACGGTCAAAAGGGTACTTGTGGTATT 2193 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 ||||||||||| |||||| | |||||| || ||| ||| || ||| |||||||| Sbjct 2192 CAGTATCGTCAAGAGGATATGGCATTTACTTGTGAAGGTTTAGCTCCCGATATTATTATT 2133 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || || ||| |||| ||| ||||| Sbjct 2132 AATCCTCACGCTATTCCCTCTCGTATGAC 2104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595186188570000