Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28]
92,075 sequences; 319,935,455 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq76374 154 2e-32
seq8915 104 3e-17
seq35888 98.7 1e-15
>seq76374
Length=5101
Score = 154 bits (170), Expect = 2e-32
Identities = 270/391 (69%), Gaps = 24/391 (6%)
Strand=Plus/Minus
Query 164729 TTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGAT---------AATA 164779
|||| | |||||||| || ||||| |||||||| |||||||| | ||||
Sbjct 3373 TTATAATCTTTGATGAAATCGATGCCATTTGCAAACAACGTGGTTCTGTGGCCGGCAATA 3314
Query 164780 TTATT---CATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCT 164836
| | |||||| | ||||| ||||| ||| | | ||||| ||||| |||||| |
Sbjct 3313 GTGGTGTCCATGATACTGTGGTAAATCAATTGTTAGCCAAAATCGATGGCGTAGAACAAT 3254
Query 164837 TAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTAT 164896
||||||| |||||| || | |||||||| || || | |||| | |||||||| || ||||
Sbjct 3253 TAAATAACATTTTAGTTATTGGTATGACTAATCGTCGTGATATGATTGATGACGCCTTAT 3194
Query 164897 TACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCC 164956
| || || ||||| || ||| | |||| ||||| | |||||| | || | || ||
Sbjct 3193 TGCGTCCCGGTCGTTTGGAAGTACAAATGGAAATTAGTTTACCCAATGAACAGGGTCGTG 3134
Query 164957 TTCAAATTTTAAAAGTTCATGTGGCTAAA---ATG---AAATCCTGTGATATATTATCTC 165010
| ||||||||||| |||| | ||| ||| ||| | ||| | | | |
Sbjct 3133 TGCAAATTTTAAATATTCA---CACCAAACGCATGCGTGAATTC---AATAAAATTGCCC 3080
Query 165011 CCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAG 165070
| ||||| |||| || | || ||||| |||||||| | ||||||||| ||||| |
Sbjct 3079 CAGATGTTGATTCCAAGGAGATTGCTGCTCTTACTAAAAACTTTAGTGGTGCCGAATTGG 3020
Query 165071 AGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101
| || || ||| | || ||||| || || ||
Sbjct 3019 AAGGTTTGGTACGTGCTGCTCAGTCTACAGC 2989
Score = 95.1 bits (104), Expect = 1e-14
Identities = 174/252 (69%), Gaps = 6/252 (2%)
Strand=Plus/Minus
Query 164446 ATTTTCAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGC 164505
|| || ||| |||||||||||||| || |||| || | || || | | |||
Sbjct 3721 ATCTTTAGAAGAGCATTTGCTTCTCGAGTCTTTCCACCAGAGTTGGTAGAACAGCTGGGC 3662
Query 164506 TGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATG 164565
|| || || |||| || ||||||||| |||| || || ||| |||||||| || |||
Sbjct 3661 TGCAAGCACGTAAAGGGTATTTTATTATATGGTCCACCCGGTACTGGTAAAACTTTGATG 3602
Query 164566 GCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCT 164622
|| || |||| ||| | |||||| | || || ||| ||||||||||||||
Sbjct 3601 GCCCGTCAAATTGG-CAATATGTTAAATGCCAGAGAGCC--TAAGATTGTTAATGGTCCA 3545
Query 164623 GAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAG 164682
| | ||| | |||||||| ||||| |||||||| || | ||| || ||| ||
Sbjct 3544 CAGATTTTGGATAAATATGTGGGTGAATCAGAAGCCAACATCAGACGTTTATTTGCCGAA 3485
Query 164683 GCTGAAGAAGAA 164694
||||| || |||
Sbjct 3484 GCTGAGGAGGAA 3473
>seq8915
Length=10834
Score = 104 bits (114), Expect = 3e-17
Identities = 204/300 (68%), Gaps = 14/300 (5%)
Strand=Plus/Plus
Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATC 6758
||||| ||| ||||| | | | |||||||||||||||||| ||||| || || |
Sbjct 9000 TGGATAAGGTTTATAGCCGACAATTTCAAAATCTTCAAATTTGAAATCCTCTATATCCTT 9059
Query 6759 AGACttt---tttttt----AATATTACAACAGGTGAAGGTTTTATTGATCGAGTTAATT 6811
| |||| |||| | ||| | | ||| |||||| || ||| ||
Sbjct 9060 A-ACTTCACGTTTTATGAGCAATTTAGGGAAAGGACGAGGTTTA------CGTTTTAGTT 9112
Query 6812 GTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAA 6871
|||| || | || || ||||||| ||||| ||| | ||| || ||||||||||
Sbjct 9113 GTTCCTTCAAAGGTTCAATATGATTCTTATAAACATGGGTATCACCAGTGGTATGAATAA 9172
Query 6872 ATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAG 6931
| || |||||||||| | | | |||||||| | |||||||| ||| ||||| ||||
Sbjct 9173 AATCTCCTGGTTTCAAACCGGTAATATGAGCAATCATATATGTTAGTAAAGCATATGAAG 9232
Query 6932 CTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATA 6991
||| |||||| || || || | ||||| || || | |||||| | ||||| ||||
Sbjct 9233 CTATATTAAATGGCACTCCAAGACCCATGTCAGCACTGCGTTGATACAACTGACATGATA 9292
>seq35888
Length=10298
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 19355 ATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATG 19414
||||| |||| ||||| ||||||||||| | | |||||| || || ||||||||
Sbjct 2252 ATACCGCAAATTGGTGACAAGTTTGCTTCGCGTCACGGTCAAAAGGGTACTTGTGGTATT 2193
Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474
||||||||||| |||||| | |||||| || ||| ||| || ||| ||||||||
Sbjct 2192 CAGTATCGTCAAGAGGATATGGCATTTACTTGTGAAGGTTTAGCTCCCGATATTATTATT 2133
Query 19475 AACCCACATGCTTTTCCAAGTCGAATGAC 19503
|| || || ||| |||| ||| |||||
Sbjct 2132 AATCCTCACGCTATTCCCTCTCGTATGAC 2104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595186188570000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |