Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq41065 134 7e-27 seq42357 125 4e-24 seq29842 125 4e-24 seq44073 123 1e-23 seq64868 122 5e-23 seq29176 122 5e-23 seq11713 122 5e-23 seq35505 120 2e-22 seq69083 113 2e-20 seq64573 113 2e-20 >seq41065 Length=4930 Score = 134 bits (148), Expect = 7e-27 Identities = 90/99 (91%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 11434 TAGAAT-TAATAAAAA--ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||||| ||||||||| ||||| ||||||||||| |||||||||| ||||||||||| Sbjct 4805 TAGAATCTAATAAAAAGGATCAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCG 4746 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||||||||||||||||||| Sbjct 4745 TTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4707 Score = 129 bits (142), Expect = 3e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 2114 AAAAATCTAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 2055 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 2054 CTCTAACCAACTGAGCTAATGGGCC 2030 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 3148 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3089 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 3088 CAACTGAGCTAATGGGCC 3071 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 4011 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3952 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 3951 CAACTGAGCTAATGGGCC 3934 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1019 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 960 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 959 TGAGCTAATGGGCC 946 >seq42357 Length=5123 Score = 125 bits (138), Expect = 4e-24 Identities = 80/88 (91%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| || |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1412 ATAAAAAATTTAACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 1471 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 1472 ACGCTCTAACCAACTGAGCTAATGGGCC 1499 >seq29842 Length=2381 Score = 125 bits (138), Expect = 4e-24 Identities = 81/88 (92%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11443 TAAAAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 876 TACAAAATACAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 935 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 936 ACGCTCTAACCAACTGAGCTAATGGGCC 963 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1269 TAAAAAAT----TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 1324 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 1325 CGCTCTAACCAACTGAGCTAATGGGCC 1351 Score = 114 bits (126), Expect = 7e-21 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTT-CGACCTTCGCGTTATT 11495 || ||||||||| | ||||||||||| |||||||||| |||||||||||||||| Sbjct 585 AAATAATAAAAATGAACGTTGGCCCATGAGGGGATCGAACCNCGCGACCTTCGCGTTATT 644 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 645 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 678 >seq44073 Length=9355 Score = 123 bits (136), Expect = 1e-23 Identities = 80/87 (92%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 2200 AAAAATAAACATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 2259 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 2260 GCTCTAACCAACTGAGCTAATGGGCCG 2286 >seq64868 Length=1603 Score = 122 bits (134), Expect = 5e-23 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| || ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 428 ATAAAAAATTTTAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 369 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 368 CGACGCTCTAACCAACTGAGCTAATGGGCC 339 >seq29176 Length=26567 Score = 122 bits (134), Expect = 5e-23 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 ||| || ||| || |||||| | |||||||||| |||||||||| |||||||||| Sbjct 18466 AATGTAAAATGAAAAAAAAAAACATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 18525 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| ||||||||||||||||||||| Sbjct 18526 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 18566 Score = 111 bits (122), Expect = 8e-20 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || ||||| | | ||||||||| |||||||||| ||||||||||||||||| Sbjct 18844 AATAAAACAAAAAGCGATATGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 18903 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 18904 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 18936 >seq11713 Length=11227 Score = 122 bits (134), Expect = 5e-23 Identities = 90/104 (87%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAA----TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||| ||||||||| ||| | || |||||||||| |||||||||| |||||||| Sbjct 1261 TATA-AATTAATAACAAAAAGTTGAATGTGGCCCATGAGGGGATCGAACCCGCGACCTTC 1319 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1320 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 1363 >seq35505 Length=2393 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 2033 AAAAAATATAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 2092 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 2093 CGCTCTAACCAACTGAGCTAATGGGCC 2119 >seq69083 Length=1787 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1363 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1422 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1423 TGAGCTAATGGGCC 1436 >seq64573 Length=1421 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1032 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 973 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 972 TGAGCTAATGGGCC 959 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261197763972700