Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq43370 125 6e-24 seq10127 118 9e-22 seq82145 111 1e-19 seq10922 111 1e-19 >seq43370 Length=3724 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || ||||| ||||||||||| | ||| || ||| || ||| ||| ||| Sbjct 2570 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 2511 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | ||||| || | ||| |||||||| || |||||||||||||| | Sbjct 2510 AATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 2451 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | ||||| | | ||||| || | || |||||||| Sbjct 2450 ATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTA 2391 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | |||||| || ||||||||||| Sbjct 2390 CCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10127 Length=8452 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | || || |||||||| | ||| || || || |||| ||| || Sbjct 6923 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTC 6982 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| ||| ||||||| || | |||||||||||||||||||||||| || || | Sbjct 6983 CAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTATCCTG 7042 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| | | |||||| | | ||||| || | ||||||||||| Sbjct 7043 GATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACTTCCAAGGTGATGGTTTT 7102 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || || ||||| ||||| Sbjct 7103 ACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| ||||| || || || | || |||||||| || | ||| | Sbjct 7126 TTTGCATACCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGT 7185 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| ||| |||| ||||| ||| | ||||| || | |||||||| Sbjct 7186 AGTCAGAAAGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGAT 7245 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||| || || | ||||| ||||| ||| | | || || | Sbjct 7246 CTGGGGGAATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAG 7305 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| ||||| || || | ||||| || || |||||||| Sbjct 7306 GTTCAACTTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 94790 AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTG 94849 || ||||| |||||||| | ||||||||||||||| | ||| || || | ||| | Sbjct 7689 AAACGCAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGG 7748 Query 94850 GAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| |||| ||||| || ||||||| | | ||| || ||||||||||||||||| Sbjct 7749 CCATCTTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAGGAATACCTTCC 7808 Query 94910 TTGTC 94914 || || Sbjct 7809 TTATC 7813 >seq82145 Length=1636 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | ||| || || ||||| ||||| |||||||| ||||| | Sbjct 1409 AAAATTTGCATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATA 1350 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || ||| || |||| ||||| || |||| || || | ||| Sbjct 1349 TTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGT 1290 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || || ||||| ||||| | |||||| || || || | | ||| || Sbjct 1289 TGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCG 1230 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | | || || || | ||||||||||| ||||| | || || |||||||| |||||| Sbjct 1229 GAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 1170 Query 95009 C 95009 | Sbjct 1169 C 1169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| ||||| |||||||| | || ||||| ||||| | ||| | Sbjct 1633 TTTGCATACCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGT 1574 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | |||| | ||| |||| ||| || || | || || || | || |||| Sbjct 1573 AGTCGGATAAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGAT 1514 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||||||||| | ||||| || || || | | ||| || | Sbjct 1513 CTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAG 1454 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | || || ||||| || || | ||||| || || || ||||||| Sbjct 1453 GTTCAACCTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATGC 1397 >seq10922 Length=8781 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| || ||||||| | | |||||||||| | || ||||| | || || || Sbjct 3019 CGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCG--AGAGGGTACGAC 3076 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| |||||||| | || || || | ||| |||||||| ||||| ||||||| Sbjct 3077 CATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTT 3136 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || || ||||| | | |||||| | | ||||| |||| || | Sbjct 3137 TGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGACCTCAAGAGTAA 3196 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || ||||| ||||| |||||||| Sbjct 3197 TGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447775244847000