Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq21508 167 5e-37 seq49710 122 2e-23 seq64728 82.4 1e-11 seq54081 82.4 1e-11 seq92052 80.6 5e-11 seq90195 80.6 5e-11 >seq21508 Length=3451 Score = 167 bits (184), Expect = 5e-37 Identities = 290/422 (69%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| ||||| ||| | ||| | |||||| || ||||| | | | Sbjct 768 ACATGATCATTATAAACATGACGAATATTTAGTTCATCCTGTTTGAACATAATTATCATA 827 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||| || |||| || | || || || |||| ||||| |||||||| | || || Sbjct 828 TTTGCGTTGTCTCGTATTAAATGTTTAGGAATTCTCGTATACGTTTGACATAAGTAAAAA 887 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||||||| || || ||||||||||| ||| | | || | || ||||| ||| Sbjct 888 GAATCAACATTTTTATGGCGACCCATGCAAAAATATGAACGAATATTATTTTGTTTCTCA 947 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524 ||||||||||| ||||||||||| | || ||| || || || ||||| || ||| Sbjct 948 CAAGCAACATCATCAAATATCATTAGTGAATTATTTTTTGCTTCATCAGGAGGTATAACA 1007 Query 7525 GCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCC 7584 || | || || ||||| || |||| || || || | | | || | ||| Sbjct 1008 CTATCGTTATCACTAAATGTAAAATATCCCATCCCTGTTATAGGAGTCATGAGCTTTTCC 1067 Query 7585 AGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTC 7644 | | ||||||| || ||||| | || || ||||| || | ||||||||||||||| | Sbjct 1068 AAGTACTGATATTTAGGTTGATAGAGCGATTTTGAATATAAATATATATTCTCAAATTTT 1127 Query 7645 AAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGC 7704 ||||| || ||| | |||| ||| |||| |||| ||||||||||| || |||||| Sbjct 1128 AAACCATTCGGACTTTCAATCAGACTAAGCATGACATTAGTCTTTCCACAATTAGATGGC 1187 Query 7705 CC 7706 || Sbjct 1188 CC 1189 Score = 100 bits (110), Expect = 6e-17 Identities = 226/339 (67%), Gaps = 3/339 (1%) Strand=Plus/Plus Query 7929 AAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATC 7988 ||||| | || || ||| ||||| | | | ||| | || || || || || || |||| Sbjct 1405 AAGGTATATTAAATAATTTAATCGATATTTTACCAATAGAGCTGCATATTCCGGGATATC 1464 Query 7989 AGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAA 8048 | | || ||||| || ||||| | ||| | |||||| |||||||| |||||| | Sbjct 1465 AATTTTGTGGTCCAGGAACAAAACTTAAAAAGCGTTTAGCTAGAGGTGATAAAGGTATCA 1524 Query 8049 ATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATT 8108 |||| || || |||| |||| ||||| ||||||||||| | ||||| | | ||| Sbjct 1525 ATCCATTAGATACTGCTTGTAGAGAACATGATATAGCTTATTTTCAAAATAG---AGATT 1581 Query 8109 TGGAAGCTCGTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACGATTTCAAG 8168 || || | | ||||| ||||| | |||| | ||| ||| ||||| || | Sbjct 1582 CAACAGAACGCAGCAAAGCTGACAAAATATTGACTGAAAGAGCTTGGGAACGAGTTTTAT 1641 Query 8169 CGAGAGACGCTGCTATTGGTGAAAAAGCTGCTGCTTGGAGTGTAAATAAAATCATGAAGT 8228 | | ||| | ||| || |||||| | ||| | | ||||| ||| |||||| Sbjct 1642 CAAAAGATAGTAGTATAGGAGAAAAAACAAGTGCCTATATTGTAACTAATGCAATGAAGA 1701 Query 8229 TAAAAAGACGTTTCGGTATGGGGATTaaaaaagaaaaaC 8267 ||||| || |||||||| || |||| |||||| Sbjct 1702 CAAAAACTAAATTTGGTATGGGACTTCAAAACAAAAAAC 1740 >seq49710 Length=2887 Score = 122 bits (134), Expect = 2e-23 Identities = 179/248 (72%), Gaps = 14/248 (6%) Strand=Plus/Minus Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAG 4531 ||||| |||| ||||| ||| | ||||||||||| |||||||||||| | |||||| Sbjct 1190 ATAAATATAAATATGTAATTTATTATAAAAATTTAAAACAATGTTTAAAACATGGTTTAA 1131 Query 4532 TTCTTAAGAAAATACACCTAG--TCTTGAAATTTGAGCAATCAGACTGGCTCAAATC--A 4587 | || || || || ||| | ||||||||||| ||||| | ||||| || | | Sbjct 1130 AATTAAATAACATTCA--TAGTATATTGAAATTTGAACAATCTAAATGGCTGAAGCCGTA 1073 Query 4588 TATATCGATAAA-AATACCGCATGCCGAAAACTA--GCTAAGAATGAGTTCGaaaaaaaC 4644 ||| || |||| ||| |||| | |||| || || |||||||| |||||||| Sbjct 1072 TATTTCCTTAAATAAT-----ATGCACAGGACTAATGCAAAAAATGAGTTTGAAAAAAAT 1018 Query 4645 TTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATAT 4704 || | ||||||| | |||||| | |||| ||| || || |||||||| ||| |||||| Sbjct 1017 TTCTTTAAATTATTAAATAATTCAGTTTATGGTAAAACAATGGAGAACGTAGACAAATAT 958 Query 4705 AAAGATAT 4712 | |||| Sbjct 957 CGAAATAT 950 >seq64728 Length=1543 Score = 82.4 bits (90), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 4493 ACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAG 4552 |||| | |||||| |||||||| | | || ||||| | ||||||||||| ||| Sbjct 1282 ACTACAGAAATTTACAACAATGTATTCAAAATGGAGTAGTTTTAAAGAAAATACA--TAG 1225 Query 4553 ---TCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCAT 4609 |||| |||||| | |||||||| ||| | ||| ||||| ||| ||||| | | Sbjct 1224 AATTCTT-AAATTTAATCAATCAGATTGGTTGAAAAAGTATATTGATTTAAATAACTACT 1166 Query 4610 GCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGG 4669 ||| | |||| |||||| || ||| |||| |||| || || ||||||| || | Sbjct 1165 ATAGAACATTAGCAAAGAATTCATTTGAACAAAATTTTTTCAAGTTGTTGAATAACGCTG 1106 Query 4670 TTTTTGGAAAGACGATGGAGAATGT 4694 | | || || || ||||| ||||| Sbjct 1105 TATACGGTAAAACCATGGAAAATGT 1081 >seq54081 Length=3599 Score = 82.4 bits (90), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 4493 ACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAG 4552 |||| | |||||| |||||||| | | || ||||| | ||||||||||| ||| Sbjct 850 ACTACAGAAATTTACAACAATGTATTCAAAATGGAGTAGTTTTAAAGAAAATACA--TAG 907 Query 4553 ---TCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCAT 4609 |||| |||||| | |||||||| ||| | ||| ||||| ||| ||||| | | Sbjct 908 AATTCTT-AAATTTAATCAATCAGATTGGTTGAAAAAGTATATTGATTTAAATAACTACT 966 Query 4610 GCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGG 4669 ||| | |||| |||||| || ||| |||| |||| || || ||||||| || | Sbjct 967 ATAGAACATTAGCAAAGAATTCATTTGAACAAAATTTTTTCAAGTTGTTGAATAACGCTG 1026 Query 4670 TTTTTGGAAAGACGATGGAGAATGT 4694 | | || || || ||||| ||||| Sbjct 1027 TATACGGTAAAACCATGGAAAATGT 1051 >seq92052 Length=6701 Score = 80.6 bits (88), Expect = 5e-11 Identities = 145/212 (68%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 4483 TATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAA 4542 ||||| |||| |||| ||| ||||||||||| | || |||||| | || ||| Sbjct 759 TATGTAGTTCATTATAGTGTTTTAAAACAATGTTTGCAAAATGGGTTAGTTTTAAAAAAA 818 Query 4543 ATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAAT 4602 || || | | || | |||| | ||||| | ||||| ||| |||||| ||| |||| Sbjct 819 ATTCATAGAATTTTAACATTTAAACAATCGGCATGGCTTAAAAAATATATTGATTTAAAT 878 Query 4603 ACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAAT 4662 || | | || ||| || ||| | || |||||||| |||| ||| | | || Sbjct 879 ACAAAGTACAGAGCTTCAGCAAAAAATAAATTTGAAAAAAATTTTTTCAAACTGCTCAAC 938 Query 4663 AATGCGGTTTTTGGAAAGACGATGGAGAATGT 4694 || || || | ||| ||||||||||| ||||| Sbjct 939 AACGCAGTATATGGGAAGACGATGGAAAATGT 970 >seq90195 Length=1227 Score = 80.6 bits (88), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 5308 TAAACTCTCGCCACATTTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTT 5367 |||||||| ||||||| ||| | ||||||||| |||||||| ||||||||||| Sbjct 1081 TAAACTCTTTCCACATTAATCCCTTTAATGTTCTATTAAAACGTTCTATTATGGATGCTT 1140 Query 5368 TGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTT-CATCAGATCTTTGAAT 5426 | | | || |||||||||| |||| || || || || || ||| |||| | ||| Sbjct 1141 TTAAAACACTATATGTTGAATAGTGATTAATTTTATG-TGTTTGCATTAGATGATGAAAT 1199 Query 5427 TCTTTGTTGTAAAACTCTTTACC 5449 | || ||| |||| |||||||| Sbjct 1200 TGATTATTGAAAAATTCTTTACC 1222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97867275709550