Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq74052 152 5e-32 >seq74052 Length=11856 Score = 152 bits (168), Expect = 5e-32 Identities = 447/690 (65%), Gaps = 6/690 (1%) Strand=Plus/Plus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || ||||||||||| |||| |||| |||| ||||||||| || ||||| || || Sbjct 5452 ATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCTATCAAATTGAC 5511 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 || | ||| | ||| | || || ||| || || ||||| || || | || Sbjct 5512 GGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTGATAATTTCAAT 5571 Query 21430 TATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACA 21489 || || ||| || | | | || ||||||||||| || ||||||||||| Sbjct 5572 AATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACCGCAAAATCACA 5631 Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 ||| ||||| ||||| | || |||||||| || ||||| | ||| ||||| | || Sbjct 5632 ATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCAGGCATAAGACC 5691 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAATGCCCTCAACG 21607 | || |||| ||| || || || ||||| ||| ||| |||||||| ||||| || Sbjct 5692 ACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTG--AAGAAAATACCCTCCACA 5749 Query 21608 GCAGCAAATGCAACTAAT-CGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTC 21666 |||||||| |||| |||| |||||||| | ||| ||| | ||||| Sbjct 5750 GCAGCAAAAGCAA-TAATACGTTCACCAAAATTAGCCGATTTCGAGGAAATCCAAGCCAT 5808 Query 21667 TGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtt 21726 ||||| | ||||| |||| | || || ||||| || || || |||| || Sbjct 5809 AGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAAAGAGATAATC 5868 Query 21727 tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTAT 21786 | || ||| | || ||||||||||||||| |||| Sbjct 5869 ACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAGTGTAC 5928 Query 21787 ATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGA 21846 |||||| || || || || || || || ||||| | |||||||| | ||| || || Sbjct 5929 ATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTCTTG 5988 Query 21847 ATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAA 21906 | || |||| | | | |||||||| || || ||||| || ||||| || || | Sbjct 5989 GGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAGCAAAGAAAGCTAG 6048 Query 21907 TATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTT 21966 | || | || |||| ||||| || || || | | ||| ||| || | ||||| Sbjct 6049 AACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTTTCCCAGTCGGAATTGTCTTT 6108 Query 21967 TGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 || | ||| |||||||| |||||||| Sbjct 6109 GGAAAGATCCACTTCTTCTACAGTCCAAAA 6138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531288615423000