Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9860 513 2e-140 seq74052 264 1e-65 seq14616 109 7e-19 >seq9860 Length=13996 Score = 513 bits (568), Expect = 2e-140 Identities = 1400/2122 (66%), Gaps = 34/2122 (2%) Strand=Plus/Plus Query 62142 ATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATA 62201 ||||| || || | || || ||||||| |||| | ||||| | ||| ||||||| Sbjct 9144 ATGAAAGCGCCACGATCGGCGGCCATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACT 9203 Query 62202 GTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGT-TTGTATTC--TGAATGGATCCACC 62257 || || || | || | || ||| || |||| | || ||| || ||||| || | Sbjct 9204 GTCTTGTATAGATCACGTA-TATGTTTGGGAATTTCTTCTATGGCTTGTATGGAGCCGCG 9262 Query 62258 ATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCT 62317 || | ||||| |||| || || ||||||| |||||| | ||||||||| || | Sbjct 9263 ATTGGAAATAATTTTATTTTTCATTTCATCATCCCATAAATCAAGTTCGGTTAAATCTTT 9322 Query 62318 AAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATT 62377 ||| | ||| |||| || || | |||||||| ||||| || | | |||||||||||| Sbjct 9323 AAGCAAATGATGATTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATT 9382 Query 62378 ACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGG 62437 ||| |||||||| | || ||||| || || | |||||| || || || || || || Sbjct 9383 GGAGGTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGG 9442 Query 62438 CATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGA 62495 ||| || || | | ||| ||| | | ||| ||||| ||||||| || || | Sbjct 9443 CATGGGGGCTAATAGCAAAGAATTGCGTACACC--ATGTTGCTTGATTTTCTCCTTCAAC 9500 Query 62496 GGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCG 62555 | ||| ||||| | || | ||| |||||| ||||| Sbjct 9501 TCTGACCAGTTCCACAAGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCC 9560 Query 62556 TTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACA 62614 ||||| | | || | || ||| || || |||| || || || || || | |||||| Sbjct 9561 TTACTTACTGGAC-AGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACA 9619 Query 62615 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC 62674 ||| || || ||||| || |||||||| |||||||| |||| | ||||| || Sbjct 9620 ACTAGCTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGC 9679 Query 62675 --TTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62732 || || || ||| | || ||| | | ||| || | || || || || |||||| Sbjct 9680 CTTTTCA--CTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACA 9737 Query 62733 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC--AGCTTCTGGAATAGGATAAT 62790 || || || ||||| | ||| | | |||| || |||| ||| || || | ||||||| Sbjct 9738 CCTATGCCAATAGGACGATGACGCATATTGGA--TTTCCTAGCCTCAGGCAAGGGATAAT 9795 Query 62791 AATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTT 62850 | ||||| || || ||||| |||||||| || ||| ||||| |||| |||| || Sbjct 9796 AGTTAATGTCGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTTTCAATT 9855 Query 62851 TGAGAAAATCAAATCGCCCATCTATT---ACAAACATGTTCAAGGCAACAGATGCCAGAT 62907 | ||||||||| | ||| | |||||||| || | ||| | || |||| || Sbjct 9856 TTTTAAAATCAAAGGTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAAT 9915 Query 62908 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62967 |||||||||||| ||||| || | | ||||| || ||||| ||||| | || || | Sbjct 9916 TACAAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGC 9975 Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 |||| || || || | |||||| || ||||| || ||| || ||||| ||||| | | Sbjct 9976 ACTTAATGGTGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACA 10035 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087 | | |||||||| ||||| | || | ||| || || || ||| | | |||||| Sbjct 10036 TATAGGGAGTACCGGTTTCTACTTGGGCTTCAATTATAGCAAACCAAAGAGCCTGAGCCT 10095 Query 63088 TTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCG 63146 | | | |||| | | |||| || |||| || ||||||||| |||||| || Sbjct 10096 TGACAGTGCGATTGGCCTTACCTT-CTTTTTCATACTTGGTATACAATTCTTCGAATTCC 10154 Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206 || |||||||||| | || || ||||||| | |||||||| | ||||| || || Sbjct 10155 TCACCCCAAACATCCTGCAGACCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCA 10214 Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCT 63265 | || | ||| ||||||||||| | || || ||||| | ||| ||| || |||||||| Sbjct 10215 TTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACAAAGC-ATAGAAAAGATCTCT 10273 Query 63266 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63325 || ||| || || || || || || || || || | ||| | || | | |||||| || Sbjct 10274 GGCTCTGTGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAAAATATCTGA 10333 Query 63326 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63385 |||||| || ||||| || || || | | ||||| |||||| || |||||||| | Sbjct 10334 ATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAAC 10393 Query 63386 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63445 || | || || ||| | || || | |||||| | | ||| ||||| | || || Sbjct 10394 ATAACGGGCCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCGTT 10453 Query 63446 GGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCC 63503 || ||| || | | || | || | ||| | | | ||| || || || || Sbjct 10454 AGTGCCGTCAATGGAAGTGCCCTTAGCTCTAATGCAGTGCACATT--TATGCCAATACCA 10511 Query 63504 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTA 63563 || || ||| || || | || ||| ||| | | | | |||||||| || | Sbjct 10512 CCCGCTGATTTGGAAATCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGAA 10571 Query 63564 TCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 63623 || | | |||| | | | || || |||| || | | | | || | || | Sbjct 10572 TCGGCCACCATGGTCAACAAGAAGCATGACGACAACTGCGGTCTATTGGTAGCGGCCGCA 10631 Query 63624 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63683 || || ||||| ||||| || ||||| | ||||| | | ||| || || |||||| Sbjct 10632 AACAATGTAGGTGAAGCATGAGTAAAATAACGCTCAGACAACAAATTATAAGTTTCAATA 10691 Query 63684 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 63743 || || || ||||| | ||| || |||| || || | ||||||||| ||||| ||| Sbjct 10692 GCCGAATCAATATCATCTCCATGTATACCTATAGCTACTCTCATTAACATATGCTGTGGT 10751 Query 63744 CTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 63803 || ||||| ||||| || ||||||| ||| || ||| | |||| || || || || Sbjct 10752 CTCTCAACAATCTTACCATTCATTTTCAGCAAATAAGATCTCTCCAGTGTCTTGAAGCCG 10811 Query 63804 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATAT 63863 || |||||||| |||||| || || |||||||| ||| || | || || | Sbjct 10812 AAGTAGTTGTAGCCAAAGTCACGATCATAAATAATTGACGAATTTAAACGTTCTGCATTT 10871 Query 63864 TTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGG 63922 || | |||| || | ||| || | ||||| | || || || |||| | | Sbjct 10872 TTCTGCACTACAT-TGTAGTGGTATTCGGAAATCAAAGGCGATGGTCTCCCCGTCTCTTT 10930 Query 63923 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 63982 ||||||| | | | | ||| || || || |||| |||||| ||||| ||||| Sbjct 10931 ATTAACAAAATGATACAGATCACTTATAACCTCTGAGAATACTTTTTTCGTTTCTTTGTG 10990 Query 63983 TAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACA 64042 | ||| ||||| || || | || || | ||||||||||| ||| | ||||| | Sbjct 10991 CAAATTGGATACTGCAATACGAGCTGCCAATATGGCATAATCGCCATGATTAGTAGTTAA 11050 Query 64043 AGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 64102 || || || | || || |||| | | || | |||| || || || ||| || | Sbjct 11051 TGTAGCAGCAGTCTCTGCCGCCAAATTATCTAGTTCTTGTGTAGTAACACCACAGTAAAG 11110 Query 64103 TCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATA 64162 || | ||| ||||||| | || | ||||| | |||| | || |||||||| Sbjct 11111 GCCATTAATTACCTTCAGTGTAATGGCCACTGGATCAACGAAATCCATATTCAAGCCATA 11170 Query 64163 ACATAATTTTCTAATACGAGACGTGATTTTATCAAACATG-ACATTTTCCTTGTATCCAT 64221 |||| ||| ||| || || || |||||||| || ||| || | ||||||| ||||| Sbjct 11171 GCATAGCTTTTGAATTCGTGATGTTATTTTATCGAA-ATGAACCTCTTCCTTGCGTCCAT 11229 Query 64222 TTCGTTTAATGACAAACATTTT 64243 |||||||| ||||||| ||| Sbjct 11230 CTCGTTTAAGAACAAACAATTT 11251 >seq74052 Length=11856 Score = 264 bits (292), Expect = 1e-65 Identities = 498/726 (69%), Gaps = 15/726 (2%) Strand=Plus/Plus Query 33119 CCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 ||||||| | ||| | ||| || || |||||||| ||| | ||||| || ||||| Sbjct 5433 CCAATTCCACTAGCAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAAT 5492 Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238 |||| ||||| | || || || | ||| | ||||| |||||||||||||| |||| Sbjct 5493 TCATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCG 5552 Query 33239 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 33298 | || || ||||| ||| | || ||| || | || | ||||||||||||| Sbjct 5553 CTTCGGTGATAATTTCAATAATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACA 5612 Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358 | || || ||||| || || | |||||| || | ||| | ||| ||||| || | Sbjct 5613 TTAATACCGCAAAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATG 5672 Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418 | || || ||||| || ||||| || || ||||| || ||||| || || ||| | Sbjct 5673 TAAGACCAGGCATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGA 5732 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCA 33477 |||| || || || || |||||||| ||||||| | || ||| || || | | || Sbjct 5733 AGAAAATACCCTCCACAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCG 5792 Query 33478 TGTA--TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | | |||| ||||||||| ||||| || ||| ||||| ||||| |||| Sbjct 5793 AGGAAATCCAAGCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGG 5852 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 ||||||||||||| | | | | ||| |||| |||| |||| || | || ||||| Sbjct 5853 CATTAAAGAGATAATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTAT 5912 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 ||||||| || || | ||||| ||||| || || || || |||||||| | ||||| | Sbjct 5913 ACATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTG 5972 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 ||| ||||||||| | || ||||| | | ||||||||| || || || || | Sbjct 5973 TAACTTGTACTTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAG 6032 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGTGTTAGTTTAT 33772 | ||||| || || | |||||| || |||| || | ||| |||| ||| | | Sbjct 6033 CAGCAAAGAAAGCTAGAACATGTGAAATGAAATGACGTTCATTGTC-GGTG--AGTCTTT 6089 Query 33773 TCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 ||| || |||| ||||| || | ||| |||||||| || |||||||| || || | Sbjct 6090 CCCAGTCGGAATTG---TCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTT 6146 Query 33830 CTGCCT 33835 | |||| Sbjct 6147 CGGCCT 6152 >seq14616 Length=5376 Score = 109 bits (120), Expect = 7e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 28461 AATACCCAATTCTTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATA 28520 ||||||||||||||| ||||| |||| |||||||| ||||| || || || || ||||| Sbjct 1340 AATACCCAATTCTTTAACCTGTGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAAATA 1399 Query 28521 AATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 28568 ||| ||| | ||||| || ||||||||||||||||| | ||| || || Sbjct 1400 AATGTGTTTGTTATCGGAAATCCAAAATTTTGTATGTAAAACACCACC 1447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622230226707000