Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq9860 131 2e-25 seq43370 98.7 9e-16 >seq9860 Length=13996 Score = 131 bits (144), Expect = 2e-25 Identities = 494/761 (65%), Gaps = 28/761 (4%) Strand=Plus/Plus Query 147449 ATGCTGATTGACCAC-TTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAG 147507 ||| |||||||| || |||| | || ||||||| ||| | || ||| | ||| | Sbjct 9329 ATGATGATTGACAACATTGA-ATTCTCCCGACAAAACACGTCTAGTGTAAATATTGGAGG 9387 Query 147508 TAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGT 147567 | |||| || || || || ||||| |||||||| ||||| |||| || || |||||| Sbjct 9388 TGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATGG 9447 Query 147568 AAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCA---TTTCTCGCTTAAGCTCGT 147624 || | | || |||||||||| || || | || |||||| ||| | ||| Sbjct 9448 GGGCTAATAGCAAAGAATTGCGTACACCATG--TTGCTTGATTTTCTC-CTTCAACTCTG 9504 Query 147625 CCCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCAC 147684 ||||||||| | || | | | ||| ||||||||| ||| | |||| | || Sbjct 9505 ACCAGTTCCACAAGTCTGTGGGT--GTTT-TATTCCACATATCGTATTGTAGTATACCCT 9561 Query 147685 AACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATAC 147744 |||| | || | || |||| || ||||| || | || || | ||| || Sbjct 9562 TACTTACTGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAAC 9621 Query 147745 TTTGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGC 147802 | ||| | ||| ||||||||||||||||| |||||| || |||||| || Sbjct 9622 TAG--CTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGC 9679 Query 147803 CTCTTGGCTGTCGTAGGGCATATCC---AAAATGGCGAACGTATCCGCAAGTCCTTGAAT 147859 || || || || ||||| | | ||||| || ||||| |||| || |||| Sbjct 9680 CTTTTCACTCTCATAGGGGTAACGCATTAAAAT---CAAAGTATCGGCAAAACCCTGAAC 9736 Query 147860 ACCGATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAA 147919 ||| || || || || || || | | ||| ||| ||| || ||| |||||| | Sbjct 9737 ACCTATGCCAATAGGACGATGACGCATATTGGATTTCCTAGCCTCAGGCAAGGGATAATA 9796 Query 147920 ATTCAAGTCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGA 147979 || | |||||| ||||| |||||||| ||||||| ||| ||| ||||| | | Sbjct 9797 GTTAATGTCGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTTTCAATTT 9856 Query 147980 CTTAAAGTCGAAG--CTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCC 148037 ||||| || ||| ||||| ||| | || |||| |||| | ||| || |||||| Sbjct 9857 TTTAAAATCAAAGGTCTTTT---CTGGT--GTGACAAACATATTAAGGGCTATGGAGGCC 9911 Query 148038 AAGTTACACACGGCCGTTTCTCGATTGTCGCTATATTGAACGATTTCGGCACACAGATTG 148097 || ||||| ||||| | || | | | ||||| || || || | |||| ||| Sbjct 9912 AAATTACAAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTG 9971 Query 148098 CTGTTTCGAATCACTCCCTCGtttttttGATTATTTTTATTGTTAACGTGATCTTTAAAC 148157 ||| ||| || |||| || ||| |||| ||| | ||||||| || Sbjct 9972 CTGCACTTAATGGTGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATAC 10031 Query 148158 ATCATGTATGGAGCTCCGGTCTCGACTTGAGTCTCAATAAT 148198 | ||| || |||| ||||| || ||||| | ||||| || Sbjct 10032 AACATATAGGGAGTACCGGTTTCTACTTGGGCTTCAATTAT 10072 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/160 (72%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 ||||| |||||||| | || ||||| || || ||||||||||| |||||||| || ||| Sbjct 8929 ACGGTAAATTGAATAGCATTGGCTGCTGGCTTTGTTCTCAAATAATACATGCCGGTCTTT 8988 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT---ATAGGTTGGATTG 147230 || || || ||| | |||| || ||||| | || ||| || |||| | | Sbjct 8989 AAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAA---TTTGCCGTAATTTGGCTCG 9045 Query 147231 GCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAG 147270 |||||| | ||||| |||||| || ||||| ||| ||| Sbjct 9046 GCCACATGTATATTGAACGATTGACTTTGATCTATGAAAG 9085 >seq43370 Length=3724 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||||||| ||| | || ||| | ||| | || | | Sbjct 2362 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 2421 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| || || ||||||||||| || || || |||||| Sbjct 2422 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 2481 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || || |||||| | ||||||| | | | | | |||||| ||| Sbjct 2482 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 2541 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| ||| | ||| |||| || Sbjct 2542 ATCCAAAAGGAATCCACTTTACATTTGGTACT 2573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478111489494000