Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9860 100 2e-16 seq43370 98.7 9e-16 seq82145 89.7 4e-13 seq10922 87.8 2e-12 >seq9860 Length=13996 Score = 100 bits (110), Expect = 2e-16 Identities = 476/745 (64%), Gaps = 20/745 (3%) Strand=Plus/Plus Query 132199 ATGTTGATTTACTAT-TTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAG 132257 ||| ||||| || | |||| |||| ||||| || || | || ||| | ||| | Sbjct 9329 ATGATGATTGACAACATTGA-ATTCTCCCGACAAAACACGTCTAGTGTAAATATTGGAGG 9387 Query 132258 TAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGT 132317 | |||| || || ||||| ||||| || | ||||| || |||| || || |||||| Sbjct 9388 TGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATGG 9447 Query 132318 AGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCC 132377 ||| | | || |||||||| | || ||| |||| | || | ||| || Sbjct 9448 GGGCTAATAGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCTGACC 9507 Query 132378 AGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTAC 132437 ||||||||| || | | | | ||||||||| ||| | |||| ||| ||| Sbjct 9508 AGTTCCACAAGTCTGTGGGT---GTTTTATTCCACATATCGTATTGTAGTATACCCTTAC 9564 Query 132438 TTGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCT 132497 || | ||| | ||| ||||| || |||| || | | || ||| | ||| || Sbjct 9565 TTACTGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAG 9624 Query 132498 GACTCAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTT 132557 || || |||||||||||||| || | || | | ||| || || | || Sbjct 9625 CTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGCCTTTT 9684 Query 132558 GACTGTCGTAGGGCAAAT---TTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGA 132614 ||| || ||||| || ||||||| || | |||||||| ||||||| || | Sbjct 9685 CACTCTCATAGGGGTAACGCATTAAAATC---AAAGTATCGGCAAAACCCTGAACACCTA 9741 Query 132615 TACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTTTT 132674 | || || || | ||| | ||| ||| || || || |||||| |||| Sbjct 9742 TGCCAATAGGACGATGACGCATATTGGATTTCCTAGCCTCAGGCAAGGGATAATAGTTAA 9801 Query 132675 TGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAA 132734 |||| || ||||| |||||||| || || | ||| ||| || || | | || || Sbjct 9802 TGTCGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTTTCAATTTTTTAA 9861 Query 132735 AGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATCGAGGCCAAATTGC 132794 | |||||| | || | || ||| | |||| ||| | ||| || ||||||||||| | Sbjct 9862 AATCAAAGGTCTT--TTCTGGTGT-GACAAACATATTAAGGGCTATGGAGGCCAAATTAC 9918 Query 132795 ATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTTC 132854 | |||||| |||| | | | ||| | ||| || |||| ||||| || ||| Sbjct 9919 AAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACT 9978 Query 132855 GAATAACTCCCAAGtttttttGATTGTT--TTTCTCGTTTAC-GTTATCTTTATGCAACA 132911 ||| | |||| | ||||| | ||| ||| || || | | |||||||| ||||| Sbjct 9979 TAAT-GGTGCCAA--TATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACA 10035 Query 132912 TGTACGGACCTCCGGTTTCGACCTG 132936 | || ||| |||||||| || || Sbjct 10036 TATAGGGAGTACCGGTTTCTACTTG 10060 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 ||||| |||||||| | ||| || || ||||| ||||| |||||||||||||| ||||| Sbjct 8929 ACGGTAAATTGAATAGCATTGGCTGCTGGCTTTGTTCTCAAATAATACATGCCGGTCTTT 8988 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 |||||| | ||| | ||| |||||||| | || | ||| | || | |||| Sbjct 8989 AAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGCTCGGCC 9048 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAG 132020 ||| | ||||| ||||||||| ||||| ||| ||| Sbjct 9049 ACATGTATATTGAACGATTGACTTTGATCTATGAAAG 9085 >seq43370 Length=3724 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||||||| ||| | |||||| | ||||||||| | | Sbjct 2362 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 2421 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || || ||||||||||| || || || |||||| Sbjct 2422 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 2481 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || || || ||| | ||||||| | | | | ||| || ||| Sbjct 2482 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 2541 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || | ||||| || Sbjct 2542 ATCCAAAAGGAATCCACTTTACATTTGGT 2570 >seq82145 Length=1636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||||| ||||| ||| | || || | || || ||| | | Sbjct 1171 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 1230 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || ||| ||||| ||||| || || || |||||| Sbjct 1231 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAA 1290 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | ||||| ||| | ||||| | | | | |||||||| Sbjct 1291 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 1350 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||||||| | ||||| || ||| | ||| | || || Sbjct 1351 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 1397 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||||||||| || ||| | ||||| | || || || | Sbjct 1399 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTCG 1458 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || || ||||||||||| || || || |||||| Sbjct 1459 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1518 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || ||||| | ||||||| | | | | ||| || ||| Sbjct 1519 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAAC 1578 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||||||| || |||| || || || Sbjct 1579 ATTCAAAAAGAATCCACCCTTCACTTGGTATT 1610 >seq10922 Length=8781 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| |||| || || | ||||| | || |||||| | Sbjct 3234 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATTACTCTTGAGGTCGAGCCGTC 3175 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | |||||| |||||| ||||||||||| || || || ||||| Sbjct 3174 GGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 3115 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||||| || || || ||| | ||||||| | | | || ||||| || Sbjct 3114 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACCCTCTCGGATTACAA 3055 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| |||| ||||| | | || ||||| || Sbjct 3054 TATTGAAAAGGAATCCATTCTGCACTTAGTATT 3022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429453541271625