Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq43370 140 3e-28 seq9860 125 7e-24 seq82145 118 1e-21 seq10127 116 3e-21 seq10922 93.3 4e-14 >seq43370 Length=3724 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||||| || || |||||||| |||||||| ||| | Sbjct 2588 CCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 2529 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | || || || ||| |||| ||||| || || || || ||| Sbjct 2528 AAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 2469 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | || |||| | ||||| Sbjct 2468 ATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACT 2409 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| |||| |||||| ||||| |||||||| Sbjct 2408 TCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq9860 Length=13996 Score = 125 bits (138), Expect = 7e-24 Identities = 461/718 (64%), Gaps = 13/718 (2%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGAC----GCAAATACACGTTAGACGT 145110 |||||||| || | || || || | ||| ||||| | | ||||| || || || Sbjct 9333 TGATTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATA----TTGGAGGT 9388 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | | |||||||| || || || ||||| || ||||| ||||||| || ||||||||| Sbjct 9389 GTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATGGG 9448 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 || | | || |||||||| | || || | |||||| | ||||| | | ||| Sbjct 9449 GGCTAATAGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCTGACCA 9508 Query 145231 ATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGC 145290 | ||| | || || | | |||||| ||||| || | || |||| || | Sbjct 9509 GTTCCACAAGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCCTTACTTAC 9568 Query 145291 GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTC 145350 || | ||| || | | || |||| ||| ||| | || ||||| || || Sbjct 9569 TGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCTTC 9628 Query 145351 CAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCT 145410 || ||||| ||||||| || ||| ||| || || | || | ||| | || || Sbjct 9629 CAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGCCTTTTCACT 9688 Query 145411 CTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGAT 145470 ||| || || |||| | | |||| |||||| | ||||| | || | ||| || Sbjct 9689 CTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATGCCAAT 9748 Query 145471 GGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 || ||||| ||| ||| |||| ||| | ||||| ||| |||||| Sbjct 9749 AGGACGATGACGCATATTGGATTTCCTAGCCTCAGGCAAGGGATAATAGTTAATGTCGAT 9808 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTT-GTAATGTGCCGCAACTTTTCAAAGTCAA 145589 ||||| || | | ||| || | |||| || | | ||| |||| ||| |||| Sbjct 9809 GATTTTGTTGA-GATTCTTGGTAATGACTTTAGTGACATTTTTCAATTTTTTAAAATCAA 9867 Query 145590 ACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTG 145649 | | || || ||| | |||| | ||| || || |||||||||||||| | Sbjct 9868 AG---GTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAACGG 9924 Query 145650 CCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709 | |||| || | | | |||| ||| ||||| | |||||| ||||| || || |||| Sbjct 9925 CTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAATGG 9984 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || | ||||||||| |||||||| | |||||| || || || || | ||| || || Sbjct 9985 TGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGGG 10042 >seq82145 Length=1636 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||| || || || | ||| || || |||||||||||||| ||| Sbjct 1625 CCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAT 1566 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||| || ||| | || |||||||| || || || || Sbjct 1565 AAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 1506 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| |||| | | | || | |||||| | | || | Sbjct 1505 ATACCTTCTTTGTCTTGGATTTT-AGCTTTAACATTTTCTATAGTATCCGAAGGTTCAAC 1447 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| |||||||| |||| ||||| |||||||| |||||| Sbjct 1446 CTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 1398 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||||||| | || ||||| | || || || ||||| || || ||||| Sbjct 1398 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGA 1339 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || | || ||||| || | || ||||| || || || || || Sbjct 1338 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 1279 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||| ||||| ||| ||| |||| | | | || | |||||||| | ||| | Sbjct 1278 GATTCCTTCCTTGTC-TTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAA 1220 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| || || | || || || || || |||||| Sbjct 1219 CCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 1170 >seq10127 Length=8452 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131003 ATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT 131062 ||| ||| || || | ||| ||||| ||||| | ||| ||||||||||| |||||||| | Sbjct 6901 ATGCGCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGT 6960 Query 131063 CGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCG 131122 | || ||||| || || | || ||||| || |||| ||||| ||||| || | Sbjct 6961 CAGACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTG 7020 Query 131123 GAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACT 131182 |||| || ||||| || || ||| || ||||| | || | ||| || | | || Sbjct 7021 GAGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCT 7080 Query 131183 CGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || | ||| | |||||||||||| | || |||||||| || ||||| Sbjct 7081 CGACTTCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||| |||||||| | ||| || ||||| || |||||||| || Sbjct 7134 CCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 7193 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | || ||||| ||| |||| ||||| ||||| || || || Sbjct 7194 AGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 7253 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || |||||| ||| | | ||| | ||||||| | || | Sbjct 7254 ATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACT 7313 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| ||||| | ||||| |||||||||||||| Sbjct 7314 TCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 >seq10922 Length=8781 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||||| || | | || ||||||| ||| |||||||| Sbjct 3007 CCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAG 3066 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | || || || ||| | || ||||| || || || || || Sbjct 3067 AGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 3126 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | ||| || | | ||||| Sbjct 3127 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGAC 3185 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| ||||| ||||| ||||| || ||||||||||| Sbjct 3186 CTCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471469542768000