Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10127 143 2e-29 seq82145 140 2e-28 seq43370 120 2e-22 seq10922 109 4e-19 seq33070 98.7 7e-16 seq8517 98.7 7e-16 seq75653 84.2 1e-11 seq33583 84.2 1e-11 >seq10127 Length=8452 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||||||| || ||||| || ||| ||||| || || ||||| |||| Sbjct 7132 TACCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 7191 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || |||||||| ||||| || || | ||||| ||||| | || Sbjct 7192 AAAGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGG 7251 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| ||||| |||||| |||| | ||||| | ||||| Sbjct 7252 GAATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAA 7311 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || |||||||| || ||||||||||| ||||| |||||||| Sbjct 7312 CTTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 >seq82145 Length=1636 Score = 140 bits (154), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||||||| ||||| ||||| ||| || |||||||| ||||| || | Sbjct 1627 TACCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGG 1568 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| || | || || || || || || || || || | || |||||||| | || Sbjct 1567 ATAAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGG 1508 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||||| || ||||| | | |||||| | ||||| Sbjct 1507 GAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAA 1448 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||||||||| ||||||||||| || ||||| ||||| || |||||| Sbjct 1447 CCTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 1398 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | |||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct 1397 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGAC 1338 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || |||| || |||||||| || ||||| || | ||||||||||| | ||| Sbjct 1337 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 1278 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| |||||| || ||||| | | |||||| | ||||| Sbjct 1277 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACC 1218 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || ||||| || ||||| || || || || || |||||| Sbjct 1217 TCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 1170 >seq43370 Length=3724 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | |||| |||||||| || ||||| || | Sbjct 2590 TACCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGG 2531 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || |||||||| || || || || | ||||||||||| | || Sbjct 2530 ACAAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGG 2471 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| ||| ||||| | | || || | || | Sbjct 2470 GGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGA 2411 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 2410 CTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10922 Length=8781 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||| || || || ||| || ||||||| |||||||||||| || Sbjct 3006 ACCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGA 3065 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | ||| | || || ||||||||||| || || || | ||||||||||| | || Sbjct 3066 GAGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 3125 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268 | |||||||||||| ||| || || ||||| | | ||| || | || || | Sbjct 3126 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTC-CGACGGCTCGA 3184 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || |||||||| | |||||| || || |||||||| Sbjct 3185 CCTCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 >seq33070 Length=2474 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1888 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 1829 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 1828 GGTTATATTTAG 1817 >seq8517 Length=13206 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 474 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 533 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 534 GGTTATATTTAG 545 >seq75653 Length=1825 Score = 84.2 bits (92), Expect = 1e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || || ||||| || || || || ||| | ||||||| || || || | | ||| Sbjct 620 AATGAACGTTTCATTGTGAATGGCTCCCATGATGCTGCCAAACTACAAGATCTTTTAGAC 561 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || ||||| ||||| |||||| ||||||||||| || || || || || | | Sbjct 560 GGTTTCATCCGCAAATTTGTCTTGTGTCCCGAATGCGATAATCCCGAAACTGATCTCACT 501 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 || || | || | | || || |||||| ||||| || || |||| |||||| Sbjct 500 GTTTCGGCTAAAAATCAAACTATTTCTCAGTCTTGCAAGGCCTGTGGTTTCCATGG 445 >seq33583 Length=8120 Score = 84.2 bits (92), Expect = 1e-11 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 25898 TAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 25945 ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 TAANAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334571334289325