Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq74052 340 2e-88 seq57097 132 5e-26 seq65260 131 2e-25 seq33254 127 2e-24 seq14830 127 2e-24 seq7601 86.0 7e-12 >seq74052 Length=11856 Score = 340 bits (376), Expect = 2e-88 Identities = 497/701 (71%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || |||||||||||||| | |||||||| | ||||||||| |||| | | || Sbjct 5452 ATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCTATCAAATTGAC 5511 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || | ||| || || | ||| |||| || ||| || ||||| | | ||||| || Sbjct 5512 GGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTGATAATTTCAAT 5571 Query 93046 TA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 | |||| | ||| | |||||| | || || ||||||| |||||| || Sbjct 5572 AATTCTCTCCCGACTGG--GACGTTGTACCAAATGTTTAAACATTAATACCGCAAAATCA 5629 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 ||||||||| || || ||||| ||||| |||||| |||||| | ||| || | || Sbjct 5630 CAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCAGGCATAAGA 5689 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || |||||||| ||||| || || || |||||||| ||| || || ||||| ||||| Sbjct 5690 CCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAGAAAATACCCTCCACA 5749 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || ||||| || | ||||||||| ||||||| || || || | ||||| | | Sbjct 5750 GCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCGAGGAAATCCAAGCCATA 5809 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 |||||||| || || ||||| | || | ||||| || || ||||| || ||||| Sbjct 5810 GCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAAAGAGATAATCA 5869 Query 93344 CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACA 93403 |||| || ||| || || |||| |||| | | |||||||||||| || ||| Sbjct 5870 CGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAGTGTACA 5929 Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 || ||||| ||||||||||| || |||||||| | || || || | || |||||||| Sbjct 5930 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTCTTGG 5989 Query 93464 GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAAT 93523 || || | || || |||||||||||||| || |||||||| || ||||| ||||| | Sbjct 5990 GAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAGCAAAGAAAGCTAGA 6049 Query 93524 ATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTT 93583 | ||| || ||||| |||| || | || | ||||| ||||| ||||| Sbjct 6050 ACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTTTCCCAGTCGGAATTGTCTTTG 6109 Query 93584 GAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 |||||||| |||||||| ||||||||||| || ||||| || Sbjct 6110 GAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTTCGGC 6150 >seq57097 Length=3780 Score = 132 bits (146), Expect = 5e-26 Identities = 95/108 (88%), Gaps = 6/108 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 2157 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 2216 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA----TTATTATTGGAATTTTT 126366 ||||||||||||||||||||||||||| ||||| ||| | ||||| Sbjct 2217 GTGGGTTCGAACCCCACACCTGACAAAACAGTTATTTTTGTATTTTTT 2264 Score = 129 bits (142), Expect = 7e-25 Identities = 85/93 (91%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TC 126316 || || |||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 103 ATGTAAAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGA 162 Query 126317 GGGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||||||||| Sbjct 163 GGGAGCGTGGGTTCGAACCCCACACCTGACAAA 195 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 645 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 704 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 705 GTGGGTTCGAACCCCACACCTGACAAA 731 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 1382 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1441 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 1442 TGGGTTCGAACCCCACACCTGACA 1465 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 2515 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 2574 Query 126323 GTGG 126326 |||| Sbjct 2575 GTGG 2578 >seq65260 Length=3861 Score = 131 bits (144), Expect = 2e-25 Identities = 92/104 (88%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 2247 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 2188 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||||||||||||||||||||| | | || ||||||| Sbjct 2187 GTGGGTTCGAACCCCACACCTGACAAACTTTCTTTTTAATTTTT 2144 >seq33254 Length=14354 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 14000 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 14059 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 14060 GTGGGTTCGAACCCCACACCTGACAAA 14086 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 13593 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 13652 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 13653 TGGGTTCGAACCCCACACCTGACAA 13677 >seq14830 Length=11793 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 6258 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 6317 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 6318 GTGGGTTCGAACCCCACACCTGACAAA 6344 >seq7601 Length=2310 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 2117 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 2058 Query 126323 GTGG 126326 |||| Sbjct 2057 GTGG 2054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556219888023000