Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq43370 136 3e-27 seq10922 123 2e-23 seq82145 109 5e-19 seq10127 109 5e-19 >seq43370 Length=3724 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||||| || ||||| ||||| |||||||| ||| Sbjct 2591 ATACCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCG 2532 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | ||||||||||||| |||| | ||| ||||| || || Sbjct 2531 GACAAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGG 2472 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| || || || | | ||||| |||||||| | ||| Sbjct 2471 GGGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCG 2412 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || | |||||| || || |||||||| Sbjct 2411 ACTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10922 Length=8781 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| ||||| || | | ||||| |||| ||| |||||||| Sbjct 3006 ACCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGA 3065 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| | |||||| |||||| | || | ||| ||||| || || || Sbjct 3066 GAGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 3125 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||| | | ||||| ||||| | | ||||| Sbjct 3126 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGAC 3185 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||| |||||||||||||| Sbjct 3186 CTCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 >seq82145 Length=1636 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | ||| || || || | || |||||||||||||||||||| ||| Sbjct 1628 ATACCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCG 1569 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | || ||||||||| | || | ||||||||| || || Sbjct 1568 GATAAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGG 1509 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||||||||| || ||| | |||| | | ||| | || || | | ||| Sbjct 1508 GGAATACCTTCTTTGTCTTGGAT-TTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTC 1450 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||||| || || | ||||| || ||||| |||||| Sbjct 1449 AACCTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 1398 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| | | || || ||||| | |||||||||||||| || || ||||| Sbjct 1400 ATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCA 1341 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | |||||| ||||| | || | ||| ||||| || || Sbjct 1340 GACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 1281 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || || ||||| ||||| ||| ||| | |||| | | ||||| || |||| | || Sbjct 1280 GGGATTCCTTCCTTGTCTTGAAT-TTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTC 1222 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | |||||||| |||| || || ||||| || |||||| Sbjct 1221 AACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCATG 1170 >seq10127 Length=8452 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | ||| |||||||| | || ||||| || || |||||||| || Sbjct 7131 ATACCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 7190 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| | |||||| || ||| |||| | ||| || || || || Sbjct 7191 GAAAGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGG 7250 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || || || || | | |||| ||| |||| | ||| Sbjct 7251 GGAATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCA 7310 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||||||||||| ||||| || ||||||||||| Sbjct 7311 ACTTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | |||||| || || | |||||||| ||||| |||||||| || Sbjct 7677 ATACCACCACGTAAACGCAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCC 7736 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| | |||||||||||| |||| ||||| |||||||| ||| Sbjct 7737 GAAAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGGTCTGGA 7796 Query 114273 GGAATGCCTTCTTTGTC 114289 ||||| ||||| || || Sbjct 7797 GGAATACCTTCCTTATC 7813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419662940274900