Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10127 147 5e-30 seq10922 127 5e-24 seq82145 125 2e-23 >seq10127 Length=8452 Score = 147 bits (162), Expect = 5e-30 Identities = 161/213 (76%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||| | ||| | ||| ||| || ||||| || ||||| | || |||||||| ||||| Sbjct 7151 TACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTC 7210 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATC 288380 |||||||| || |||||||||| ||| || ||| |||||| || ||||| ||||| Sbjct 7211 CAATTGTTTGCCGGCGAAGATCAAACGTTGCTGA---TCTGGGGGAATACCTTCCTTATC 7267 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||||||||| || |||||||| || || | |||| | ||| ||||| | ||||| || Sbjct 7268 CTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACTTCCAAGGTGATAGT 7327 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||| || || ||||| |||||||| Sbjct 7328 TTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | | ||||| || ||||| |||||||| || || ||| Sbjct 6942 TCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAG 7001 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| || ||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 7002 ATCAAACGTTGCTGA---TCTGGAGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACG 7058 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || | || ||||| | ||||| || || ||||||| ||||| Sbjct 7059 TTTTCAATAGTGTCCGAAGGCTCGACTTCCAAGGTGATGGTTTTACCGGTCAAGGTCTTT 7118 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 7119 ACGAAGATTTGCAT 7132 >seq10922 Length=8781 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||| ||||| || || | ||| || || || ||||| ||||||||||| ||||| Sbjct 3042 TTCCTTTTCAATATTGTAATCCGAGAGGGTACGACCATCTTCCAATTGTTTTCCAGCGAA 3101 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| ||| ||||||||||| ||||| || || ||||| || || Sbjct 3102 AATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATT 3161 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| || || || || || || || || ||||| || || || || ||||| Sbjct 3162 TTCAATAGTGTCCGACGGCTCGACCTCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGAC 3221 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 3222 AAAAATCTGCATT 3234 >seq82145 Length=1636 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | | ||||| |||||||| |||||||| || || || Sbjct 1362 TTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAA 1303 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| |||||||||||| || || || ||||| ||||| || || Sbjct 1302 AATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATT 1243 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| | || || || | ||||| || || || |||| ||||| || Sbjct 1242 TTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAAC 1183 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 1182 AAAGATTTGCAT 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178262748801850