Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq70009 98.7 1e-15 seq9860 91.5 2e-13 >seq70009 Length=3032 Score = 98.7 bits (108), Expect = 1e-15 Identities = 240/358 (67%), Gaps = 12/358 (3%) Strand=Plus/Plus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| ||||||||||| |||| || || || | |||||| || | ||||||||| Sbjct 2223 AACCGGTGCCAATACCATCGGCACCATTAACCAAAACCATGGGTATAACTGGCATATACC 2282 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | | ||| |||||| | |||||||| || ||| | |||| || || || | Sbjct 2283 ATTGTGGCTCAATCCTTTGACCATCATCCACCTCATACTGCAGCAAAGGATCATCATGGG 2342 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGTGAG----TTTTGTGAAGATGTACCTCGTT-TG 171900 ||| || || ||| || | | ||| | | ||||| || || | | || Sbjct 2343 GATGGAAAATGAGACGTGC----TAGAGGAGACATTATAGTGAAAATATAACGAGCGCTG 2398 Query 171901 AGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATT 171960 || ||||||||| ||| | | ||| || || |||||||| | || || |||||||| Sbjct 2399 GCACA-ATCTTTGCCGCCCGTTAAACGTGTACCGAATTGACCTCTAGGCTCTAGGAGATT 2457 Query 171961 GATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGA 172019 ||||| || || |||| |||| | |||||| || ||||| || || | || || | Sbjct 2458 AATATTATTCGAGCCCACATAGTTCTGGGCCAAATTAACAATGGTCATTTGT-AGTGATA 2516 Query 172020 CTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTT 172077 | |||||||||||||| || ||| | || || || | | | || || |||||||| Sbjct 2517 CCTCACCGTGATGGTAAGCGGACATTTCAGCCACCGAACCTGACAGTTGAGCCACCTT 2574 >seq9860 Length=13996 Score = 91.5 bits (100), Expect = 2e-13 Identities = 369/575 (64%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 114275 aaaaTAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 114334 ||||| || ||| || | ||| || ||||| | |||||| || ||||| | |||||| Sbjct 9708 AAAATCAAAGTATCGGCAAAACCCTGAACACCTATGCCAATAGGACGATGACGCATATTG 9767 Query 114335 GACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 114391 || || | ||| ||| || ||||||| | || | ||||| | | || ||||| Sbjct 9768 GATTTCCTAGC---CTCAGGCAAGGGATAATAGTTAATGTCGATGATTTTGTTGAGATTC 9824 Query 114392 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 114451 ||||| | || || |||| | | | |||| ||||||| |||| ||| Sbjct 9825 TTGGTAATGACTTTAGTGACATTTTTCAATTTTTTAAAATCAAAG------GTCTTTTCT 9878 Query 114452 T---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 114508 ||||| || || |||||| || || |||| |||||| || | ||||||| Sbjct 9879 GGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAACGGCTATCTCATCAGGG 9938 Query 114509 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 114568 ||| || |||| ||| || || ||||| || | |||||||||||| | || | Sbjct 9939 GCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAATATTTTGC 9998 Query 114569 TGATTTGACTTT--GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 114626 || || ||||| ||| || ||||| || || | ||| || || || || || || Sbjct 9999 TGGTT--ACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGGGAGTACCGGTTTCTA 10056 Query 114627 TTTGGGACTTGAGAATAGCCTTCCAGACA-TCGGCGGCTGGCACAGTGGCGTTGGCTCGC 114685 ||||| | | ||||| ||| | | | | | || | |||||| ||||| Sbjct 10057 CTTGGGCTTCAATTATAGCAAACCAAAGAGCCTGAGCCTTG-ACAGTGCGATTGGCCTTA 10115 Query 114686 CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 || || | || ||||| || || | |||| || || |||||| | || || Sbjct 10116 CCTTCTTTTTCATACTTGGTATACAATTCTTCGAATTCCTCACCCCAAACATCCTGCAGA 10175 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || || || | || || | || ||||| | |||| || || ||||| ||||| Sbjct 10176 CCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATA 10235 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATC 114840 || | ||| || ||||| | ||| |||| ||||| Sbjct 10236 AACAAGTCGGGTATCCACAAAGCATAGAAAAGATC 10270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596666083341000