Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9860 181 1e-40 seq82145 109 5e-19 seq10127 100 3e-16 >seq9860 Length=13996 Score = 181 bits (200), Expect = 1e-40 Identities = 737/1162 (63%), Gaps = 38/1162 (3%) Strand=Plus/Plus Query 153998 TAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCAC 154057 |||||||| || ||| || || || | || | || || || | ||| || || | Sbjct 9314 TAAATCTTTAAGCAAATGATGATTGACAACATTGAATTCTCCCGACAAAACACGTCTAGT 9373 Query 154058 ATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGT 154117 || | |||| |||| |||| || || ||||| |||||||||| ||||| || || | Sbjct 9374 GTAAATATTGGAGGTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGA 9433 Query 154118 TGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTT--TTGCAATGCGC 154175 ||||||||||| || | | |||||| || || | ||| |||| ||| || | Sbjct 9434 AGCTGTGGGCATGGGGGCTAATAGCAAAGAATTGCGTACACCATGTTGCTTG--ATTTTC 9491 Query 154176 AATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGC 154235 || || |||| ||| |||||||||| || ||| |||||||| |||||||| Sbjct 9492 TCCTTCAACTCTGACCAGTTCCACAAGTCTGTGGGTGTTTTATTCCACATATCGTATTGT 9551 Query 154236 AAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCC 154295 | | |||| ||| | |||| | | |||| | || | || | || ||| Sbjct 9552 AGTATACCCTTACTTACTGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCC 9611 Query 154296 AAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAAC 154355 || || ||||| ||||| || || |||| || | |||||| ||| |||| |||||| Sbjct 9612 AATTCACAACTAGCTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAAC 9671 Query 154356 ATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCT 154415 | || || ||||| || || || | | || || | |||| |||||| | || Sbjct 9672 AAAAACGCCTTTTCACTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCC 9731 Query 154416 TGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTC---CAGA 154472 |||| || | |||| || | || | ||| || ||| |||||| || Sbjct 9732 TGAACACCTATGCCAATAGGACGATGACGCATATTGGA---TTTCCTAGCCTCAGGCAAG 9788 Query 154473 GGATAATAATTGATATCGATAATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN 154532 |||||||| || || ||||| ||||| || | Sbjct 9789 GGATAATAGTTAATGTCGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTT 9848 Query 154533 NNNNATGCGACAAAATCAAA---CACTCCGCTTTTAATAAAACGATTTACACACACAGAC 154589 || ||||||||| | | | | | | ||| ||| | | || Sbjct 9849 TTCAATTTTTTAAAATCAAAGGTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAG 9908 Query 154590 GCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAA 154649 ||||| || |||||||| || || |||| | |||| ||||| |||| |||||| Sbjct 9909 GCCAAATTACAAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAG 9968 Query 154650 TTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTG 154709 || ||||| ||||||||| | |||| ||| || |||| |||||| || ||||| Sbjct 9969 TTGCTGCACTTAATGGTGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTA 10028 Query 154710 TACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACTT 154769 ||||| || || || || || ||||| ||||||| |||||| || || || || | Sbjct 10029 TACAACATATAGGGAGTACCGGTTTCTACTTGGGCTTCAATTAT--AGCAAACCAAA--- 10083 Query 154770 CGCGCCTCA-ACTTGACAAGTAAATCGATT---------TTCGCTCTCATA-TTGTTCGT 154818 | |||| | |||||| ||| ||||| ||| | ||||| ||| | | Sbjct 10084 -GAGCCTGAGCCTTGAC-AGT---GCGATTGGCCTTACCTTCTTTTTCATACTTGGT-AT 10137 Query 154819 ACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACA 154878 ||| || ||| || || || | || ||| || ||||||||| || ||||||| Sbjct 10138 ACAATTCTTCGAATTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTGAGGACACA 10197 Query 154879 TCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAG 154938 | | ||||| | |||| || || |||||||||||||| || || | |||||||| Sbjct 10198 TTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACAAAG 10257 Query 154939 CGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAA 154998 | || || | ||| | || | | ||||| ||| ||||| |||||||| ||||| Sbjct 10258 CATAGAAAAGATCTCTGGCTCTGTGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAA 10317 Query 154999 AATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT-- 155056 | ||| | || || | ||||| ||||| ||||| | || | || || |||||| Sbjct 10318 ATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGC 10377 Query 155057 -TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGC 155115 || || ||||| || | ||| | ||| || |||| | | || |||| ||| | Sbjct 10378 CACCACCCTGATCAACATAACGGGCCACATTGTTAAACACCCTAAGCATTGGTACCAGAC 10437 Query 155116 CGCTGGCCGTGCCGTTGGTGCC 155137 | | | |||||||| ||||| Sbjct 10438 CATTTGAGGTGCCGTTAGTGCC 10459 >seq82145 Length=1636 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||||| | ||||| | |||| Sbjct 1601 TGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGATAAAGTGCGGCCATCTTCCAACTGC 1542 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| | ||||| || || || ||||| |||||||| ||||| | |||| Sbjct 1541 TTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGA-TTTT 1483 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | ||||| | || || |||| || | || || || || Sbjct 1482 AGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCTAATGTAATTGTTTTACCCGT 1423 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| |||||||||||||| Sbjct 1422 TAATGTTTTAACGAAAATTTGCAT 1399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || || ||||| | | |||||| ||||||| | || ||||| Sbjct 1367 GTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 1308 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || || || || || || |||||||| || ||||| | |||| ||||| Sbjct 1307 GCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG-AATTTTAGCTTT 1249 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | || || || | ||| | ||| ||||| ||||| || Sbjct 1248 AACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGT 1189 Query 64426 TTTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 1188 CTTAACAAAGATTTGCAT 1171 >seq10127 Length=8452 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | | |||| ||| | || ||||| || || |||||||| || | Sbjct 7133 ACCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 7192 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| | || |||||||| | || | || ||||| || || || Sbjct 7193 AAGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGG 7252 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || ||||| ||| || ||| | ||||| | || || Sbjct 7253 AATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAAC 7312 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | || ||||||||||| ||||| |||||||| ||||| Sbjct 7313 TTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499069740063000