Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10922 143 2e-29 seq43370 132 4e-26 seq10127 113 4e-20 seq82145 102 7e-17 seq9860 86.0 6e-12 >seq10922 Length=8781 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | ||| |||| ||||| | |||||||||| ||||| ||||| | Sbjct 3007 CCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAG 3066 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||||||||| ||| | ||||| ||||| || || || ||| Sbjct 3067 AGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 3126 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| || ||||| || ||||| ||| | ||||| || | |||||| Sbjct 3127 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGACC 3186 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||| || || || ||||| ||||| |||||||| ||||| Sbjct 3187 TCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 >seq43370 Length=3724 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || |||||||||||||| || || ||| | ||| | ||| ||||||||||| || Sbjct 2558 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCA 2499 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | ||||| ||||| || || || || || |||||||| ||||| ||||| ||| Sbjct 2498 GCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCTTG 2439 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | ||||||||||| ||||||||| | |||| ||||| || |||| |||| Sbjct 2438 ACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTACCAGTTAAAGTT 2379 Query 45324 TTTACAAAAATTTGCATC 45341 || || || || |||||| Sbjct 2378 TTGACGAAGATCTGCATC 2361 >seq10127 Length=8452 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| |||| ||| || || |||||||| ||||| || || || | ||| ||| Sbjct 7148 CAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATC 7207 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 ||||||||||| || ||| | ||||| |||||||| || || ||||| ||||| ||||| Sbjct 7208 TTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATC 7267 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || ||||| || | || | || | ||| ||||||| || ||||| | || | | Sbjct 7268 CTGGATTTTAGCCTTCA-CGTTCTCAATGGTATCGGAAGGTTCAACTTCCAAGGTGATAG 7326 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| | ||||| || ||||| ||||| Sbjct 7327 TTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| | ||| || || || ||||||||||| || || || Sbjct 6906 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 6965 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||||||||| || || | ||||| |||||||| || || ||| Sbjct 6966 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGA 7025 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| ||||| || || || |||| ||| | ||||| |||| ||||||| Sbjct 7026 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACT 7085 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | ||||| ||||| | || ||||| || |||||||| Sbjct 7086 TCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 >seq82145 Length=1636 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--T 45186 || || | ||||| || ||||| ||||| ||||||||||| ||| | | | | Sbjct 1382 AATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCA--GACAATGTGCGCCCGT 1325 Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246 | ||||||||||| || || | ||||| ||||| || || || || || ||||| || | Sbjct 1324 CTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGT 1265 Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 |||||||||| ||| | ||| | || ||||||| ||| || || | ||| | | Sbjct 1264 CTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGG 1205 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || | || || ||||| |||||||| Sbjct 1204 TTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || || || ||| | ||||| || || || || || ||||| |||||||| Sbjct 1554 ATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTT 1495 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| ||||| ||| | ||||| || || |||| || || || | |||| Sbjct 1494 GTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCTAATGTAAT 1435 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| || ||||||||||| Sbjct 1434 TGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 >seq9860 Length=13996 Score = 86.0 bits (94), Expect = 6e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 124496 CGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCAC 124555 ||| || ||||| | || |||||||||||||| || || | ||| || || || | Sbjct 9096 CGATCGTGGCGCTTTCATAGATCAAAGTCAATCGTTCAATATACATGTGGCCGAGCCAAA 9037 Query 124556 CTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAA-ACGGGCA 124614 |||| | ||||| |||||| | | || |||| | | | || ||| || |||| Sbjct 9036 TTACGGCAAATTGACCTCCATACATTTCTATGCCTGGAA-ATCAGGCTTAAAGACCGGCA 8978 Query 124615 TGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAA 124670 ||||||| || ||||| || || || ||| |||| |||||||||||||| || ||| Sbjct 8977 TGTATTATTTGAGAACAAAGCCAGCAGCCAATGCTATTCAATTTACCGTAGATAAA 8922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451482972567000