Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq70009 116 5e-21 seq9860 91.5 2e-13 >seq70009 Length=3032 Score = 116 bits (128), Expect = 5e-21 Identities = 244/358 (68%), Gaps = 12/358 (3%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| ||||||||||| |||| || || || | |||||| || | ||||||||| Sbjct 2223 AACCGGTGCCAATACCATCGGCACCATTAACCAAAACCATGGGTATAACTGGCATATACC 2282 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | ||| |||||| | |||||||| || ||| | |||| || ||||| | Sbjct 2283 ATTGTGGCTCAATCCTTTGACCATCATCCACCTCATACTGCAGCAAAGGATCATCATGGG 2342 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAG----TTTTGTGAAGATGTACCTCGTT-TG 175920 ||| || || ||| || | | ||| | | ||||| || || | | || Sbjct 2343 GATGGAAAATGAGACGTGC----TAGAGGAGACATTATAGTGAAAATATAACGAGCGCTG 2398 Query 175921 AGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATT 175980 || ||||||||| ||| | | ||| || || |||||||| | ||||| |||||||| Sbjct 2399 GCACA-ATCTTTGCCGCCCGTTAAACGTGTACCGAATTGACCTCTAGGCTCTAGGAGATT 2457 Query 175981 GATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGA 176039 ||||| || ||||||| ||||| | ||||| || ||||| || || | || || | Sbjct 2458 AATATTATTCGAGCCCACATAGTTCTGGGCCAAATTAACAATGGTCATTTGT-AGTGATA 2516 Query 176040 CTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTT 176097 | |||||||||||||| || ||| | || ||||| | | | || || |||||||| Sbjct 2517 CCTCACCGTGATGGTAAGCGGACATTTCAGCCACCGAACCTGACAGTTGAGCCACCTT 2574 >seq9860 Length=13996 Score = 91.5 bits (100), Expect = 2e-13 Identities = 369/575 (64%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 ||||| || ||| || | ||| || ||||| | |||||| || ||||| | |||||| Sbjct 9708 AAAATCAAAGTATCGGCAAAACCCTGAACACCTATGCCAATAGGACGATGACGCATATTG 9767 Query 116296 GACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 116352 || || | ||| ||| || ||||||| | || | ||||| | | || ||||| Sbjct 9768 GATTTCCTAGC---CTCAGGCAAGGGATAATAGTTAATGTCGATGATTTTGTTGAGATTC 9824 Query 116353 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 116412 ||||| | || || |||| | | | |||| ||||||| |||| ||| Sbjct 9825 TTGGTAATGACTTTAGTGACATTTTTCAATTTTTTAAAATCAAAG------GTCTTTTCT 9878 Query 116413 T---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469 ||||| || || |||||| || || |||| |||||| || | ||||||| Sbjct 9879 GGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAACGGCTATCTCATCAGGG 9938 Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529 ||| || |||| ||| || || ||||| || | |||||||||||| | || | Sbjct 9939 GCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAATATTTTGC 9998 Query 116530 TGATTTGACTTT--GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 || || ||||| ||| || ||||| || || | |||||| || || || || || Sbjct 9999 TGGTT--ACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGGGAGTACCGGTTTCTA 10056 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATACA-TCGGCGGCTGGCACAGTGGCGTTGGCTCGC 116646 ||||| | | ||||| ||| | | | | | || | |||||| ||||| Sbjct 10057 CTTGGGCTTCAATTATAGCAAACCAAAGAGCCTGAGCCTTG-ACAGTGCGATTGGCCTTA 10115 Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGC 116706 || || | || ||||| || || | | || || || |||||| | | || || Sbjct 10116 CCTTCTTTTTCATACTTGGTATACAATTCTTCGAATTCCTCACCCCAAACATCCTGCAGA 10175 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || || | ||||| | || ||||| | |||| || || || || ||||| Sbjct 10176 CCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATA 10235 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 || | ||| || ||||| | || |||| ||||| Sbjct 10236 AACAAGTCGGGTATCCACAAAGCATAGAAAAGATC 10270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612801091557000