Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq43370 123 2e-23 seq82145 116 4e-21 seq10127 111 2e-19 >seq43370 Length=3724 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || |||||||| ||| | || |||||| | || Sbjct 2362 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 2421 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| |||||||| || || ||| | || ||| Sbjct 2422 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 2481 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || ||||| |||| || | |||||| | |||||||||| Sbjct 2482 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 2541 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || | |||||||| || ||| Sbjct 2542 ATCCAAAAGGAATCCACTTTACATTTGGTACTCCGT 2577 >seq82145 Length=1636 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | ||||| ||||| || || | || || || | | Sbjct 1399 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTCG 1458 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||||| ||||||| |||||||| || |||||| | || ||| Sbjct 1459 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1518 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || ||| |||| || | ||||| | |||||||||| Sbjct 1519 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAAC 1578 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || ||||| |||||||| | || || Sbjct 1579 ATTCAAAAAGAATCCACCCTTCACTTGGTATTGCGTTTGCGTGGTGG 1625 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || |||||||||||||| | || || ||| | || Sbjct 1171 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 1230 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||||| ||||| | ||||| || ||||| || | || ||| Sbjct 1231 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAA 1290 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || |||||||| |||| |||| |||||| | || || || Sbjct 1291 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 1350 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| ||| | || |||||||||| | |||||| | || ||| Sbjct 1351 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGC 1398 >seq10127 Length=8452 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || |||||||| |||||| | || || || | || Sbjct 7360 ATGCAGATTTTCGTTAAAACCTTGACCGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 7301 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||||||| || || || || |||||| | || || Sbjct 7300 GATACCATTGAGAACG-TGAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCA 7242 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| |||||||| |||| || | |||||||| |||||||| Sbjct 7241 GCAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGACGCACCCTTTCTGACTACAA 7182 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || ||||| || |||||||| | || || Sbjct 7181 CATCCAGAAGGAATCCACCCTCCATTTAGTATTGCGTTTGCGTGGTGG 7134 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || | || || |||||||||||| | || |||||| | | Sbjct 7132 ATGCAAATCTTCGTAAAGACCTTGACCGGTAAAACCATCACCTTGGAAGTCGAGCCTTCG 7073 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| || || || || ||||| | || || Sbjct 7072 GACACTATTGAAAACG-TCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCA 7014 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | || |||||||| |||| || | ||||| | |||||||| Sbjct 7013 GCAACGTTTGATCTTTGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCTGACTACAA 6954 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||||||||| ||| Sbjct 6953 CATCCAAAAGGAGTCCACCCTCCATTTGGTGCTACGT 6917 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| || || || || ||||| | |||||||| || || || | || || ||||| Sbjct 7819 ATCCAAGATAAGGAAGGTATTCCTCCAGACCAACAACGTCTGATCTTTGCTGGTAAACAA 7760 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 |||| || | |||||||| ||||||||||||||||||||| | || || || ||| Sbjct 7759 TTGGAAGATGGCCGCACCCTTTCGGACTACAACATCCAAAAGGAATCTACTCTCCACTTG 7700 Query 38451 GTGCTGCGTTT 38461 || ||||||| Sbjct 7699 GTTTTGCGTTT 7689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499597132368000