Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq43370 152 1e-31 seq82145 150 4e-31 seq10922 134 3e-26 seq10127 132 1e-25 >seq43370 Length=3724 Score = 152 bits (168), Expect = 1e-31 Identities = 157/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTAC 195001 |||||| || ||||| || ||||| |||| |||| || | |||||||| | || |||| Sbjct 2559 AGTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTTCCAATTGTTTAC 2501 Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 | |||||||| | |||||||| ||||| || || |||||||||||||| ||||| || Sbjct 2500 CAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCT 2441 Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 |||| || ||||||||||| ||| || ||||| | ||||| || || || || |||| Sbjct 2440 TGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTACCAGTTAAAG 2381 Query 195122 TTTTTACGAACACTTGCATTTAT 195144 |||| ||||| | ||||| ||| Sbjct 2380 TTTTGACGAAGATCTGCATCTAT 2358 >seq82145 Length=1636 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| ||||| ||||||||||| ||||| |||| | ||| | ||||| Sbjct 1611 CAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGATAAAGTGCGGCCATC 1552 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||||||| ||||| || | || ||||| ||||| ||||| ||||||||||| Sbjct 1551 TTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTC 1492 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| || || || || || || |||||| ||| || || | |||| || Sbjct 1491 TTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCTAATGTAATTGT 1432 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || ||||| ||||| | |||||| Sbjct 1431 TTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||| ||||| ||||| | | || | ||| ||||| | || || || Sbjct 1367 GTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 1308 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | |||||||| ||||| || || ||||| |||||||||||||| || Sbjct 1307 GCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTA 1248 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || ||| || || || | || | || || || ||||| || Sbjct 1247 ACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGTC 1188 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 1187 TTAACAAAGATTTGCAT 1171 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 195032 GAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCA 195091 |||| || || || ||||||||||| |||||| || ||||| || |||||| ||| | Sbjct 1010 GAATCCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATCGTATCCGAAGGTTCGA 951 Query 195092 CTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||||| ||||| || || || || || ||||| | |||||| Sbjct 950 CCTCAAGGGTAATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCAT 902 >seq10922 Length=8781 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| ||| |||| || |||| |||||||||||| | || || | ||||| Sbjct 3021 CAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAGAGGGTACGACCATC 3080 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || ||||| || | |||||||| ||||| ||||| ||||||||||| Sbjct 3081 TTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 3140 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||||| || ||||| |||||||| || || ||||| |||| || Sbjct 3141 CTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGACCTCAAGAGTAATGGT 3200 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || | ||||| || || | |||||| Sbjct 3201 CTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 3234 >seq10127 Length=8452 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| ||||| || ||||| || | | ||| | |||||||| | || Sbjct 6930 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAATTGT 6989 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | ||||| || ||||||||||| ||||| || || || || || Sbjct 6990 TTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTATCCTGGATCTTA 7049 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| ||||| ||||||||| || ||||| | ||| | || || || ||| Sbjct 7050 GCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACTTCCAAGGTGATGGTTTTACCGGTC 7109 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| | |||||| Sbjct 7110 AAGGTCTTTACGAAGATTTGCAT 7132 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||||| || || || || ||||| || | ||| || | |||||||| | || Sbjct 7158 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCCAATTGT 7217 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 7218 TTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATTTTA 7277 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| |||||||||||||| || ||| ||| ||||| | ||| | || || || ||| Sbjct 7278 GCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCGGTC 7337 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| Sbjct 7338 AAGGTTTTAACGAAAATCTGCAT 7360 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | ||| ||||| || || ||||| || ||||| || | ||| || | ||||| Sbjct 7694 CAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 7753 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||||| || ||||| || |||||||||||||||||||| ||||| || || Sbjct 7754 TTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATC 7813 Query 195048 TTGAAT 195053 ||| || Sbjct 7814 TTGGAT 7819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108172732421525