Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28]
92,075 sequences; 319,935,455 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq9860 394 1e-104
seq74052 313 3e-80
>seq9860
Length=13996
Score = 394 bits (436), Expect = 1e-104
Identities = 1282/1994 (64%), Gaps = 62/1994 (3%)
Strand=Plus/Plus
Query 47253 ATAATTTTGTTTTTTAATTCATTTGACCAAAGTTTTCGTTCAGTTAATGTTTTTAAAAGA 47312
|||||||| ||||| | ||||| ||| | | |||| ||||| ||| | | |
Sbjct 9270 ATAATTTTATTTTTCATTTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTAAGCAAA 9329
Query 47313 TGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTA---TATATATTACTT 47369
||| |||| |||| | |||||||| || | || ||| ||| || |||||
Sbjct 9330 TGATGATTGACAACATTGAATTCTCCCGACAAAAC---ACGTCTAGTGTAAATATTGGAG 9386
Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429
|| || ||||| | |||||||| || || | |||||| || || || ||||| ||||||
Sbjct 9387 GTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATG 9446
Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC 47489
| || | || || ||| | ||| |||| || | || | | |
Sbjct 9447 GGGGCTAATAGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCTGAC 9506
Query 47490 CAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTT 47549
|| | ||| | |||| || |||||| | ||| ||||| || || || ||||||
Sbjct 9507 CAGTTCCACAAGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCCTTACTT 9566
Query 47550 ATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCT 47609
| ||| | || ||| |||| ||| | || | | || || | ||||||||| |||
Sbjct 9567 ACTGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAACTAGCT 9626
Query 47610 TCCAATGCACTATAATATATTGTTTC--AAATATTTTTATGTTTAGATTCCTTGCTTCTG 47667
|||||||| | |||||| || ||||| |||| | || || || | | ||| |
Sbjct 9627 TCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGAT-TTAACAAAAACGCCTTTTC 9685
Query 47668 ATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATAC 47727
| | || | || || || ||||| || || || |||||||| || |
Sbjct 9686 ACTCT-CATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATGC 9744
Query 47728 CAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATAT 47787
|||| || | |||| |||| || | ||| || || || ||||| | ||| || |
Sbjct 9745 CAATAGGACGATGACGCATATTGGATTTCCTAGCCTCAGGCAAGGGATAATAGTTAATGT 9804
Query 47788 CTATAATTTTATTTAGANNNNNNNNNNNNNNNNNN---ACAATTTCTCTTAATTTATTAA 47844
| || ||||| || ||| ||| ||| | ||||| ||||
Sbjct 9805 CGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTT---TCAATTTTTTAA 9861
Query 47845 AATCAAA---CTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATA 47901
||||||| ||| | | | |||||| ||||||| ||||| || || | |||||| |
Sbjct 9862 AATCAAAGGTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAA 9921
Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961
| |||| ||||| || || ||||| || || || | || | || | || || |
Sbjct 9922 CGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAA 9981
Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021
| || || | |||||| || ||| | ||| || || || || || | |||| | |
Sbjct 9982 TGGTGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGG 10041
Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAA 48081
| || || ||||||| || | |||||| |||| ||||| || | ||||| | |
Sbjct 10042 GAGTACCGGTTTCTACTTGGGCTTCAATTATAGCAAACCAAAGAGCCTGAGCCT---TGA 10098
Query 48082 CAGCTC---TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCC 48138
||| | | || ||| || | ||| || || ||||| || | || ||||| || |
Sbjct 10099 CAGTGCGATTGGCCTTACCTTCTTTTTCATACTTGGTATACAATTCTTCGAATTCCTCAC 10158
Query 48139 CATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCAT 48198
| | |||| | | || ||||||| | ||||||||| | ||||| || ||| |
Sbjct 10159 CCCAAACATCCTGCAGACCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATTTT 10218
Query 48199 TTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTT 48257
|| || | ||||||| | || |||||||| | ||| ||| || | ||| || | |
Sbjct 10219 CTTCCACACGTTTCATAAACAAGTCGGGTATCCACAAAGC-ATAGAAAAGATCTCTGGCT 10277
Query 48258 CTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316
|| | ||||| ||||| | || | ||||| | ||| ||| || | ||||| | |||
Sbjct 10278 CTGTGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAA-AAATTCAAAAATATCTGAATG 10336
Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376
||| || || ||||| || || | |||| || ||||| ||| || ||||| | |||
Sbjct 10337 CCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATA 10396
Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436
| ||| ||||||| | || || | |||||| || | ||||||||| | || || ||
Sbjct 10397 ACGGGCCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCGTTAGT 10456
Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCT 48494
|| ||| || | || ||||||| || | | | ||| || || ||||||||
Sbjct 10457 GCCGTCAATGGAAGTGCCCTTAGCTCTAATGCAGTGCACATT--TATGCCAATACCACCC 10514
Query 48495 GCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCA 48554
|| ||| || || | ||||| ||| | | | |||| || || ||| |||
Sbjct 10515 GCTGATTTGGAAATCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGAATCG 10574
Query 48555 TCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAAT 48614
| | ||| | || | || || |||| ||||| | || | | |||
Sbjct 10575 GCCACCATGGTCAACAAGAAGCATGACGACAACTGCGGTCTATTGGTAGCGGCCGCAAAC 10634
Query 48615 AATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACA 48674
||||| || || |||||| |||| | ||| || ||||| ||||| ||||||||| |
Sbjct 10635 AATGTAGGTGAAGCATGAGTAAAATAACGCTCAGACAACAAATTATAAGTTTCAATAGCC 10694
Query 48675 GAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTT 48734
||||| ||||| | |||||||||||||| ||| | ||||||||||| || |||||
Sbjct 10695 GAATCAATATCATCTCCATGTATACCTATAGCTACTCTCATTAACATATGCTGTGGTCTC 10754
Query 48735 TCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAA 48794
|||||||| || ||| ||||||| | ||| ||| | |||| ||| || || || ||
Sbjct 10755 TCAACAATCTTACCATTCATTTTCAGCAAATAAGATCTCTCCAGTGTCTTGAAGCCGAAG 10814
Query 48795 TAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTA 48854
|||||||| |||||| ||||| ||||||||| ||||||| | ||| || |||
Sbjct 10815 TAGTTGTAGCCAAAGTCACGATCATAAATAATTGACGAATTTAAACGTTCTGCATTTTTC 10874
Query 48855 TATACTACATCCATTACATTTTTTGATATAA----------------------TTGATT- 48891
| ||||||| | || || || | || |||
Sbjct 10875 TGCACTACATTGTAGTGGTATTCGGAAATCAAAGGCGATGGTCTCCCCGTCTCTTTATTA 10934
Query 48892 ----CCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGA 48947
| || ||||| || ||| || |||| |||||| |||||||| || | |
Sbjct 10935 ACAAAATGATACAGATCACTTATAACCTCTGAGAATACTTTTTTCGTTTCTTTGTGCAAA 10994
Query 48948 TTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTA 49007
|| |||| | || | ||| || ||||| |||||||| |||| | || || |||||
Sbjct 10995 TTGGATACTGCAATACGAGCTGCCAATATGGCATAATCGCCATGATTAGTAGTTAATGTA 11054
Query 49008 CTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCT 49067
|| | ||||| || || |||||| ||||| ||||| ||||| || | ||
Sbjct 11055 GCAGCAGTCTCTGCCGCCAAATTATCTAGTTCTTGTGTAGTAACACCACAGTAAAGGCCA 11114
Query 49068 TGAATAACTTTCATTGCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAACAT 49127
| ||| || |||| || || |||||||| | |||||||| || ||||| |||
Sbjct 11115 TTAATTACCTTCAGTGTAATGGCCACTGGATCAACGAAATCCATATTCAAGCCATAGCAT 11174
Query 49128 AAtttttttATTCTAGATGTAATTTTATCAAACATTATATTC-TCTTTACGACCGTCACG 49186
| |||| |||| ||||| |||||||| || || | || || || || || || ||
Sbjct 11175 AGCTTTTGAATTCGTGATGTTATTTTATCGAA-ATGAACCTCTTCCTTGCGTCCATCTCG 11233
Query 49187 TTTTATAACAAACA 49200
||| | ||||||||
Sbjct 11234 TTTAAGAACAAACA 11247
Score = 86.0 bits (94), Expect = 7e-12
Identities = 124/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031
|||| || || ||||| | ||| | ||| |||| ||||||| ||||||||||| |
Sbjct 8921 CTTTATCTACGGTAAATTGAATAGCATTGGCTGCTGGCTTTGTTCTCAAATAATACATGC 8980
Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091
| |||||||| ||| | |||| |||||||||| || || ||||| ||| | |
Sbjct 8981 CGGTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTG 9040
Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATC 47146
| || | | ||| ||||| | |||||||| ||||| || || || || | |||
Sbjct 9041 GCTCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGATC 9095
>seq74052
Length=11856
Score = 313 bits (346), Expect = 3e-80
Identities = 501/717 (70%), Gaps = 2/717 (0%)
Strand=Plus/Plus
Query 18778 AATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTC 18837
||||| | ||| | | ||| || ||||||| || ||| ||||| | |||||||
Sbjct 5435 AATTCCACTAGCAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTC 5494
Query 18838 ATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCC 18897
|| ||||| || || || || | ||||||||||| ||||||||||| || || || ||
Sbjct 5495 ATGCCTATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCT 5554
Query 18898 TCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATC 18957
|| | ||||| | || ||| || | | ||| | | || | ||||||||||||
Sbjct 5555 TCGGTGATAATTTCAATAATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACATT 5614
Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017
|| |||||||||||||||| ||||| || | ||||||||||| || |||||
Sbjct 5615 AATACCGCAAAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTA 5674
Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077
| ||||||||| || || | ||| |||| |||||| || || ||||| ||| |||
Sbjct 5675 AGACCAGGCATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAG 5734
Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137
|| ||||| || || || |||||||||| | | ||| ||| || |||| ||| |
Sbjct 5735 AAAATACCCTCCACAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGC-CGATTTCGA 5793
Query 19138 TG-AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196
| |||||| || |||||||||||||| || ||| ||||| || || || |
Sbjct 5794 GGAAATCCAAGCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGC 5853
Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256
|||||| ||||| ||||| || ||| |||| ||| ||| || | | ||| ||
Sbjct 5854 ATTAAAGAGATAATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTATA 5913
Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316
|||||| || || | |||||| || || || || || || || ||||| | ||| |||||
Sbjct 5914 CATTTCAGAGTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGT 5973
Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376
| |||||||| | || | ||| || | ||||||||| || || ||||| |||
Sbjct 5974 AACTTGTACTTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGC 6033
Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCA 19436
||||| || |||| |||||| ||| ||||| ||||| ||| | | | | |||
Sbjct 6034 AGCAAAGAAAGCTAGAACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTTTCCCA 6093
Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
|| | | ||||| || | ||| |||||||| || |||||||||||||| || ||
Sbjct 6094 GTCGGAATTGTCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTTCGGC 6150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561461847903000
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