Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9860 123 5e-23 >seq9860 Length=13996 Score = 123 bits (136), Expect = 5e-23 Identities = 602/950 (63%), Gaps = 21/950 (2%) Strand=Plus/Plus Query 221699 TTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATG 221758 || ||||| | | ||||| ||||| ||||| | ||| || | | ||| | || Sbjct 9894 TTAAGGGCTATGGAGGCCAAATTACAAACGGCTATCTCATCAGGGGCAGAATATTCTACA 9953 Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 |||||||| || | |||||||||||| ||||| || | | | || ||| ||||| Sbjct 9954 ATCTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAATATTTTGCTGGTTACTTTTGCGG 10013 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| || || || || | |||| ||||| || || || | || || | | || Sbjct 10014 TTGCAGGCATCTTTATACAACATATAGGGAGTACCGGTTTCTACTTGGGCTTCAATTATA 10073 Query 221879 TTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 ||| || | ||| || | || || | ||| | ||| || |||||||| Sbjct 10074 GCAAACCAAAGAGC-CTGAGCCTTGACAGTGCGATTGGCCTTACCTTCT---TTTTCATA 10129 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 | |||||| | || || | ||||| | | || | ||| || ||||| || Sbjct 10130 CTTGGTATACAATTCTTCGAATTCCTCACCCCAAACATCCTGCAGACCGGGACATTTGTG 10189 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 |||||||| || ||||| || |||| || | | ||| || | ||| || || Sbjct 10190 AGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTAT 10249 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||||| || | || |||||||||| | ||||| ||| |||| |||||||| | | Sbjct 10250 CCACAAAGCATAGAAAAGATCTCTGGCTCTGTGCTCTTCCTTGCCGGTGTTTTTCTTTAA 10309 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 ||||||||| |||||||| || | ||||| ||||||| ||| | || | || || || Sbjct 10310 ATCCAAAAATTCAAAAATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGG 10369 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGG 222237 || ||| ||||||||||| || | ||| | ||| || | | ||| | || Sbjct 10370 GCGTTTGCCACCACCCTGATCAACATAACGGGCCACATTGTTAAACACCCTAAGCATTGG 10429 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 |||||| || || || ||||| ||||| | |||| | | || || || | | Sbjct 10430 TACCAGACCATTTGAGGTGCCGTTAGTGCCGTCAATGGAAGTGCCCTTAGCTCTAATG-C 10488 Query 222298 ACTG-GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 | || || ||||| |||||||| || ||| || |||||||| || | | | Sbjct 10489 AGTGCACATTTATGCCAATACCACCCGCTGATTTGGAAATCATGGCACATTGTTCCACTG 10548 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 | | || ||||| ||||| || || | | ||| || || || ||||||| || Sbjct 10549 ACTTGAAAATACCCTCAATAGAATCGGCCACCATGGTCAACAAGAAGCATGACGACAACT 10608 Query 222417 GAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAG 222476 | | | | ||| | ||| ||||| || || || || ||||| || | | || Sbjct 10609 GCGGTCTATTGGTAGCGGCCGCAAACAATGTAGGTGAAGCATGAGTAAAATAACGCTCAG 10668 Query 222477 ACATCAGATCGTACGTCTCTA----CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATG 222532 ||| || || || || || | ||| | | || | || || || || || Sbjct 10669 ACAACAAATTATAAGTTTCAATAGCCGAAT----CAATATCATCTCCATGTATACCTATA 10724 Query 222533 GCGCATCTCATGTACATGTACTGGGGCCTCTCCACA---GGACCCTTGGAGCTGGAGAGC 222589 || |||||| |||| | ||| || ||||| ||| ||| || | ||| Sbjct 10725 GCTACTCTCATTAACATATGCTGTGGTCTCTCAACAATCTTACCATT---CATTTTCAGC 10781 Query 222590 AGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | || ||| | ||||| |||||||| || ||||||||| | ||||||| Sbjct 10782 AAATAAGATCTCTCCAGTGTCTTGAAGCCGAAGTAGTTGTAGCCAAAGTC 10831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927775757688000