Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq82145 143 4e-29 seq74052 125 1e-23 >seq82145 Length=1636 Score = 143 bits (158), Expect = 4e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||||||||| || || ||||| ||||||||||| || ||| ||| Sbjct 1399 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTCG 1458 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 1459 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1518 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || ||||||||| | |||||| | | |||||||| || || || Sbjct 1519 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAAC 1578 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | || ||||| || || || Sbjct 1579 ATTCAAAAAGAATCCACCCTTCACTTGGTATT 1610 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| ||||||||||| ||||| || || || || || || ||| Sbjct 1171 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 1230 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| ||||| || ||||| || || ||||| ||| Sbjct 1231 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAA 1290 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| || || || | ||||| | || || || ||||||||| Sbjct 1291 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 1350 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 ||| ||||| | || | ||||| || ||| Sbjct 1351 ATACAAAAAGAATCTACATTGCATTTGGTATTA 1383 >seq74052 Length=11856 Score = 125 bits (138), Expect = 1e-23 Identities = 457/710 (64%), Gaps = 15/710 (2%) Strand=Plus/Plus Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 ||| || |||||||| | |||| ||||||||| | |||||||| |||| | ||| Sbjct 5452 ATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCTATCAAATTGAC 5511 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 || | |||||| ||| ||||||| || || | || | || | || || | || Sbjct 5512 GGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTGATAATTTCAAT 5571 Query 18109 TACCCTA----GATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAA 18164 | || || | | | | || || |||| ||| | ||||| ||||| Sbjct 5572 AATTCTCTCCCGACTGGGACGTTGTACCAA--ATGT--TTAAACATTAATAC---CGCAA 5624 Query 18165 AATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCA 18224 ||||| |||||||| ||||| | || || ||||| || || || | || |||| Sbjct 5625 AATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCAGGCA 5684 Query 18225 TTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCT 18284 | | ||| | ||| |||||||| || || || || ||||| | | ||||| ||||||| Sbjct 5685 TAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAGAAAATACCCT 5744 Query 18285 CAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA-TCCA 18342 | || ||| || || || || | | |||| ||||| | ||| | | | |||| Sbjct 5745 CCACAGCA-GCAAAAGCAATAATACGTTCACCAAAATTAGCCG-ATTTCGAGGAAATCCA 5802 Query 18343 TTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAA 18402 ||||| || | | | | ||| ||| | || || |||||||| | Sbjct 5803 AGCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAAAGAG 5862 Query 18403 ATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGA 18462 || ||| | | | ||| || |||||| | || |||| | | |||||||||||| Sbjct 5863 ATAATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGA 5922 Query 18463 ATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAAT 18522 |||| ||||||| || || || || | ||| || | | ||||| | | ||| | Sbjct 5923 GTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTAC 5982 Query 18523 CTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAA 18582 || | || | ||| || | ||| ||||| || || || || | || || || || Sbjct 5983 TTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAGCAAAGAA 6042 Query 18583 TGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTAT 18642 || | ||||| | ||||||||| |||||| || |||| | | ||| || | Sbjct 6043 AGCTAGAACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTTTCCCAGTCGGAATT 6102 Query 18643 ATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 ||||| || ||||| |||||||| ||||||||||| | |||||||| Sbjct 6103 GTCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTTCGGCCT 6152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731029661070000