Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq82145 172 1e-37 seq43370 161 2e-34 seq10922 143 5e-29 seq74052 138 2e-27 seq10127 118 2e-21 >seq82145 Length=1636 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||||||||| ||||| || |||| ||||| |||||||||||| Sbjct 1400 ATGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCA 1341 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || | || ||||||||||| |||||||| || || | |||||||| ||| Sbjct 1340 GACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 1281 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||| ||||| |||| ||| || | || Sbjct 1280 GGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCA 1221 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| ||||| ||||| |||| ||| || ||||| Sbjct 1220 ACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| ||||| || || | || | ||||| || || || || Sbjct 1628 ATACCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCG 1569 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| ||||| || |||||||| || || || | ||||||||| || Sbjct 1568 GATAAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGG 1509 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| ||||| ||| || | ||| Sbjct 1508 GGAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCA 1449 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||||| |||||||| ||||||||||||| || || ||||| Sbjct 1448 ACCTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 >seq43370 Length=3724 Score = 161 bits (178), Expect = 2e-34 Identities = 186/249 (75%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| | ||| ||||||||||| | || || ||| | Sbjct 2599 GTTCAATGATACCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGT 2540 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| ||||||||||||||||| ||||| || | |||| Sbjct 2539 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTT 2480 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || |||||||| ||||| ||||| || ||||| || | || | Sbjct 2479 GATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGG 2420 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || ||||| | |||||||||||||||||||| ||||| | || ||||||| | Sbjct 2419 AAGGCTCGACTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCA-TC 2361 Query 192539 TATTAGAAA 192547 ||| ||||| Sbjct 2360 TATAAGAAA 2352 >seq10922 Length=8781 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| |||||||| || | | | | || || ||||| ||||| || Sbjct 3006 ACCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGA 3065 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| ||||||||||| ||||| || || || | |||||||| ||||| Sbjct 3066 GAGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 3125 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || || || ||| ||||| |||| || |||| || || Sbjct 3126 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGAC 3185 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||||||||| ||||| |||| ||||| | ||| ||||||||| Sbjct 3186 CTCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 3234 >seq74052 Length=11856 Score = 138 bits (152), Expect = 2e-27 Identities = 455/706 (64%), Gaps = 13/706 (2%) Strand=Plus/Plus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 |||||| |||||||| | |||| |||||| |||| ||||||||| || | || || | Sbjct 5452 ATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCTATCAAATTGAC 5511 Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagctt--gtt-taattatcat 49771 || || ||||| || ||||||| ||| |||| || |||| || ||||| || Sbjct 5512 GGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTGATAATTTCAAT 5571 Query 49772 aattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAAA 49831 |||| | | | | | || || ||| | || | | ||||| ||||| Sbjct 5572 AATTCTCTCCCGACTGGG-ACGTTGTACCAAATGT--TT---AAACATTAATACCGCAAA 5625 Query 49832 ATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 49891 |||| |||||||||||| || | || || |||||||| || || | || ||||| Sbjct 5626 ATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCAGGCAT 5685 Query 49892 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 49951 | || | || || ||||| || || || |||||||| | | ||||| |||||||| Sbjct 5686 AAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAGAAAATACCCTC 5745 Query 49952 GACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA--ATATCCAA 50009 ||| ||||| || || || | | | ||||| |||| || || | | |||||| Sbjct 5746 CACAGCAGCAAAAGCAATAATACGTTCACCAAA-ATTAGCCGATT-TCGAGGAAATCCAA 5803 Query 50010 TTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 50069 ||||||||||| || || || | || || ||| |||| || || ||||| | Sbjct 5804 GCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAAAGAGA 5863 Query 50070 TCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAA 50129 | || | | |||| | | |||||||||||| Sbjct 5864 TAATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAG 5923 Query 50130 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACT 50189 |||||| |||||| || ||||| || ||| || | ||| |||| | || ||| Sbjct 5924 TGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACT 5983 Query 50190 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 50249 || |||| |||||||| | ||| ||| ||||| ||||| || || || ||||| Sbjct 5984 TCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAGCAAAGAAA 6043 Query 50250 GCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 50309 |||| ||| | | ||| ||||| |||||| || | | ||||||| | Sbjct 6044 GCTAGAACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTTTCCCAGTCGGAATTG 6103 Query 50310 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGG 50355 || || || | ||| |||||||||| |||||||| || ||| ||| Sbjct 6104 TCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTTCGG 6149 >seq10127 Length=8452 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| ||||||||||| | || | || || ||| || || ||| Sbjct 7131 ATACCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 7190 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||||||||| || || ||||| || | || ||||| || Sbjct 7191 GAAAGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGG 7250 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || |||||| || || || || | ||| || | ||| Sbjct 7251 GGAATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCA 7310 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || ||||| || || || ||||||| || |||||||| Sbjct 7311 ACTTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||||| || ||||| | || | ||| || ||| || || ||||| Sbjct 6906 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 6965 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| ||||||||||| || |||||||| || | || ||||| || || Sbjct 6966 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGA 7025 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| ||||| || || ||| || || || |||| || || | || ||| Sbjct 7026 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACT 7085 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||||||||| || || || || | || || ||||| Sbjct 7086 TCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983318598176250