Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq78730 113 1e-19 seq60796 91.5 4e-13 seq34691 91.5 4e-13 seq46160 87.8 5e-12 >seq78730 Length=2675 Score = 113 bits (124), Expect = 1e-19 Identities = 221/327 (68%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||||||||| ||||| ||||| || | | ||| |||| ||||| | || || ||| Sbjct 1607 CCAACAGCATCGATTTCATCAATAAACAATATACAAGGAGCATTTTTACGTGCCATGGCA 1666 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | || | || | |||| ||| ||| ||||||||| ||||| || || Sbjct 1667 AACATATCACGCACTCTAGAGGGACCAACACCCACAAACATTTCTAAGAATTCGGATCCG 1726 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || ||| || | ||||| ||||| ||||| || | || | | ||| ||| Sbjct 1727 GAGACCGTAATAAAAGGCACATTAGCTTCACCTGCGGTGGCTTTGGCTAATAATGTTTTA 1786 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || || ||||| || || ||| | | || || |||| ||| || || | | Sbjct 1787 CCAGTACCAGGAGGCCCAGTTAACATGGCACCTTTGGGTATTTTGGCGCCTAAATCAATG 1846 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| | |||| | |||| ||| | |||| |||| || |||| ||| || || ||| Sbjct 1847 TATTGTTGAGGGTTTTTTAGAAAATTAACAAATTCCATAATTTCAATTTTGGCTTCTTCA 1906 Query 289330 CATCCTGCTACATCAGCAAAAGTAATA 289356 || ||||| ||||| ||||| |||| Sbjct 1907 CAACCTGCAACATCTCTAAAAGAAATA 1933 >seq60796 Length=8324 Score = 91.5 bits (100), Expect = 4e-13 Identities = 124/169 (73%), Gaps = 13/169 (8%) Strand=Plus/Minus Query 303619 TCTTCATC--TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACG 303676 ||| |||| ||| || | ||| |||||||| |||||||||||||||||||| ||||| | Sbjct 3325 TCTCCATCGATTGAGGGACATGCAAATTCATTTCATCACCGTCAAAATCAGCGTTATAGG 3266 Query 303677 GCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCACC-CTGCATCA---TAACACGGGCT 303732 | || || | |||||| ||||| || | ||| | ||| | ||||||| Sbjct 3265 GTGAGGTACACGACAAGTTCATACGGAATGT-TGACCACGGCAAAACTTTAACACG---- 3211 Query 303733 TTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAA 303781 ||||| ||||||| |||| |||| | || |||||||||||||||| Sbjct 3210 --ATGACCCATCATACTCATTTTGTGCAAAGGGGGCTGACGATTGAAAA 3164 >seq34691 Length=7183 Score = 91.5 bits (100), Expect = 4e-13 Identities = 144/202 (71%), Gaps = 12/202 (6%) Strand=Plus/Minus Query 303620 CTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCT 303679 ||||| ||| || | |||| |||||| |||||||| ||||||||||||||||| | || Sbjct 3360 CTTCACTTTGTGGTAAATGTGCATTCATTTCATCACCATCAAAATCAGCATTATAAG-CT 3302 Query 303680 TT---GTGTCCGCAACGTTCATCCGGAAAGTAT---CACCCTGCATCATAACACGGGCTT 303733 || || | || || | |||||||| | | || |||| ||| || |||| Sbjct 3301 TTACAGTTAGAGTAATGTAGA--CGGAAAGTCTTTTCCCCTTGCAAGATA---CGAGCTT 3247 Query 303734 TATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCAC 303793 | || ||| || || ||| ||||||| |||||||||||| ||||| | |||| Sbjct 3246 TGTGGGCCATAATTGAAGGTCTATGTAGAGATGGCTGACGATTCAAAAGTAACACATCAC 3187 Query 303794 CGTTTAATACATGACGATGAAC 303815 |||||| |||||||| || || Sbjct 3186 CGTTTAGCACATGACGGTGGAC 3165 >seq46160 Length=2149 Score = 87.8 bits (96), Expect = 5e-12 Identities = 88/114 (77%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| ||||||| || ||||| | || | ||| | |||| || ||||||||||| Sbjct 475 AATTTCCACAATACGTGGCACACCCTGTGTAATGTT---CATGGAAGCTACACCAGCAAA 419 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGC 301928 |||||||| ||||| || | ||||| ||||||||||||||||| ||||| Sbjct 418 ATGGAAAGTTTTCAGTGTCATCTGAGTGCCGGGCTCACCAATACTTTGAGCCGC 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470081280679275