Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq75653 107 2e-18 seq82145 104 2e-17 seq43370 93.3 3e-14 >seq75653 Length=1825 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 34262 AACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAG 34321 |||| || || ||||| |||| | ||| | | |||||||| || || |||| |||| Sbjct 452 AACCACAGGCCTTGCAAGACTGAGAAATAGTTTGATTTTTAGCCGAAACAGTGAGATCAG 511 Query 34322 TCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGT 34381 | || || || || ||||| |||||||| ||||| |||||||||||||| || | || | Sbjct 512 TTTCGGGATTATCGCATTCGGGACACAAGACAAATTTGCGGATGAAACCGTCTAAAAGAT 571 Query 34382 CCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 | |||| || | | || |||||||| || || ||||| ||||| || Sbjct 572 CTTGTAGTTTGGCAGCATCATGGGAGCCATTCACAATGAAACGTTCATT 620 >seq82145 Length=1636 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || || || ||||||||||| || | || |||||| | Sbjct 1171 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 1230 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| ||||| ||||| | || |||||| Sbjct 1231 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAA 1290 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| || ||||| |||| || | | ||| || | ||||| || Sbjct 1291 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 1350 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||||||||| ||||| |||| ||| | |||| || || Sbjct 1351 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 1397 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| ||||| || ||||| ||||| | || || ||| Sbjct 1399 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTCG 1458 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || || ||||||||||| | ||| |||||| Sbjct 1459 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1518 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| || ||||| ||| |||| |||| | | || | | || |||||| Sbjct 1519 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAAC 1578 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||||||||| || | ||| |||| || Sbjct 1579 ATTCAAAAAGAATCCACCCTTCACTTGGTATT 1610 >seq43370 Length=3724 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||||||||| || |||||||||||| | ||| |||||| | Sbjct 2362 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 2421 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || || ||||||||||| | ||| |||||| Sbjct 2422 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 2481 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || |||||||| |||| |||| | || || | || |||||| Sbjct 2482 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 2541 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| ||||| || || || |||| Sbjct 2542 ATCCAAAAGGAATCCACTTTACATTTGGT 2570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412378323992975