Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq82145 152 4e-32 seq43370 150 1e-31 seq10127 143 2e-29 seq84618 89.7 4e-13 >seq82145 Length=1636 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||||| ||||| ||||| |||||||||||||||||||| || || | Sbjct 1625 CCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAT 1566 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || | || || ||||| | ||||| | || ||||| || ||| Sbjct 1565 AAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 1506 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| ||| ||| |||||| ||| || ||| |||| || Sbjct 1505 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 1446 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || ||||| |||||||| || || ||||| Sbjct 1445 TCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 Score = 150 bits (166), Expect = 1e-31 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | |||||| | |||||||| | || ||||||||||| || |||||||| | | Sbjct 1397 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGAC 1338 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| || || | ||||||||||||| | ||||| | ||| ||||| || || Sbjct 1337 AATG-TGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 1279 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || |||||||| |||||| | ||| ||| |||| | ||| || ||| | || | Sbjct 1278 GATTCCTTCCTTGTCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAA 1220 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | ||| || ||||||||||| || || |||||||| || ||||| Sbjct 1219 CCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 >seq43370 Length=3724 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | |||||||| ||||| ||||| || || | | ||||||| Sbjct 2577 ACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 2518 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | ||||| | ||| ||||| || || ||||| ||||| Sbjct 2517 ATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTT 2458 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| |||||| |||| | ||||| ||| | || ||||| | || || Sbjct 2457 GTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAAT 2398 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| |||||||| ||||| || || |||||||| Sbjct 2397 GGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10127 Length=8452 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||||| || ||||| || |||||||| || || ||||| || || | | Sbjct 7134 CCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 7193 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||| || | ||||| | ||||||||| || ||| Sbjct 7194 AGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 7253 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || || || | ||| || || | || | || || ||| |||| ||| Sbjct 7254 ATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACT 7313 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || ||||||||||| || ||||||||||| || |||||||| Sbjct 7314 TCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||||||||| || ||||| || ||||| ||||| || || | Sbjct 6906 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 6965 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | ||||||||| ||| | ||||| | ||||||||| || ||| Sbjct 6966 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGA 7025 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || || || | || ||||| |||| | |||||| ||| | || ||| Sbjct 7026 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACT 7085 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || || ||||| || || || || ||||| Sbjct 7086 TCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 >seq84618 Length=8446 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 88950 GTTTGCATGGTTTTCATGTGCACGAATATGGCGACACGAGTAACGGATGCACGTCGGCGG 89009 |||| |||||||| ||||| ||||||| ||| |||| | ||||| ||||| || || | Sbjct 6276 GTTTACATGGTTTCCATGTTCACGAATTTGGTGACAATACCAACGGCTGCACCTCAGCTG 6217 Query 89010 GCGAACATTTCAATCCCACG-GGCATGGATCACGGCGCGCCCGACGCTTTAATGAAACAT 89068 | ||||||||| |||| | |||| ||| || || || |||| | | | | |||| Sbjct 6216 GTCCACATTTCAA-CCCATGTGGCAAGGAACATGGTGCCCCCGGTGATGAGAATAGACAT 6158 Query 89069 GTTGGTGATTTGGGAAATGTTGAAGC 89094 || ||||||||||| ||| | ||||| Sbjct 6157 GTAGGTGATTTGGGCAATATCGAAGC 6132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384786920857575