Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq9860 201 1e-46 seq82145 141 9e-29 seq10127 109 5e-19 seq43370 104 2e-17 seq10922 86.0 6e-12 >seq9860 Length=13996 Score = 201 bits (222), Expect = 1e-46 Identities = 735/1136 (65%), Gaps = 36/1136 (3%) Strand=Plus/Plus Query 150722 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGT 150781 |||||||| | ||||| ||||||||||||||||| | | ||| | ||||| Sbjct 9336 TTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTGGAGGTGTACGGT 9395 Query 150782 TCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACA 150841 ||||| || || |||||| || ||||||||||||| || || |||||| || | Sbjct 9396 TCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATGGGGGCTAAT 9455 Query 150842 AGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCAT 150901 ||||| ||||| |||| || | || | || || ||||||| |||||||| ||| Sbjct 9456 AGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCTGACCAGTTCCAC 9515 Query 150902 AACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTA 150961 || || ||| ||||||||| ||||||||| | ||| || | || || | Sbjct 9516 AAGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCCTTACTTACTGGACAG 9575 Query 150962 CCGGCAAACGTGCTATAAG-GC--TCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGC 151018 |||| | | || ||| | || || | | |||| ||| |||| || || | Sbjct 9576 CCGGGATAAGTTTCATATGTGCCATCTTTTTC---GGCCAATTCACAACTAGCTTCCAAT 9632 Query 151019 GCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACG 151078 || ||| ||| | |||||| ||| |||| ||| || | || || || ||| | Sbjct 9633 GCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGCCTTTTCACTCTCA 9692 Query 151079 TACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGA 151138 || || |||| | || || | |||||| ||||| |||| |||||||| || ||| Sbjct 9693 TAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTATGCCAATAGGA 9752 Query 151139 CGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATCAATA 151195 ||||| |||||||| ||||| | || ||| | || || | || || || Sbjct 9753 CGATGACGCATATTGGATTTCCT---AGCCTCAGGCAAGGGATAATAGTTAATGTCGATG 9809 Query 151196 ATTTTATTCAAACTATTCACTACATG--TTTGACCACAGTGTGCAATAGTTGAAAATCAA 151253 ||||| || | | | || || ||| ||| ||| | | |||| || |||||||| Sbjct 9810 ATTTTGTTGAGATTCTT-GGTA-ATGACTTTAGTGACATTTTTCAATTTTTTAAAATCAA 9867 Query 151254 AAGTATCATTAT----TGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCA 151309 | || | || | ||| | | |||| | ||| || || || | |||||| ||||| Sbjct 9868 AGGTCT-TTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAACGGCT 9926 Query 151310 GTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAAT 151369 | || || || || |||||| ||| || || | ||||| |||||||| || || Sbjct 9927 ATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAATGGTG 9986 Query 151370 CCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTG 151429 || ||| || || |||||||||||||| || || || || ||||| || || || Sbjct 9987 CCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGGGAGTA 10046 Query 151430 CCGGTTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGTAACCGC--GGGCATTTGC- 151486 |||||||| |||| ||| || | | ||| || || || | || || | Sbjct 10047 CCGGTTTCTACTTGGGCTTCAAT----TATAGCA--AACCAAAGAGCCTGAGCCTTGACA 10100 Query 151487 TCGCGA---AACTGGCCTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCA 151543 |||| || |||| | ||||| | | ||| | | ||| || || ||||| Sbjct 10101 GTGCGATTGGCCTTACCTTCTTTTTCATACTTGGTATACAATTCTTCGAATTCCTCACCC 10160 Query 151544 TACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCT 151603 | ||| | || ||||| | || ||||||||||| ||||| ||| |||||| Sbjct 10161 CAAACATCCTGCAGACCGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATTTTCT 10220 Query 151604 TCAACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTG 151663 || || ||||||||||| | || || | ||| || || | | | ||| | ||| || Sbjct 10221 TCCACACGTTTCATAAACAAGTCGGGTATCCACAAAGCATAGAAAAGATCTCTGGCTCTG 10280 Query 151664 GTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCAC 151723 ||||| |||| ||||| | | |||| || | ||| || ||||||| Sbjct 10281 TGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAAAATATCTGAATGCCAA 10340 Query 151724 GGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTTG---CCACCTTGATCCACGTGACGC 151780 || || | || | || ||| || || ||| ||||| ||||| || | ||| Sbjct 10341 GGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAACATAACGG 10400 Query 151781 ACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 151836 ||| ||| ||||| || | |||||||||| ||| || | | ||||||||| || Sbjct 10401 GCCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCGTTAGT 10456 >seq82145 Length=1636 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || ||||| || || ||||| | |||||||||||||||||| || ||||| Sbjct 1398 GCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGA 1339 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| | |||||| | |||||| |||||| | |||| |||||| ||||| || || Sbjct 1338 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 1279 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| |||||| ||| | | ||| | || || | || || || Sbjct 1278 GATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 1219 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || ||||| |||||||| || || || |||||||| Sbjct 1218 CTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || |||||||| || || |||| || ||||||||||| |||||||| ||| Sbjct 1625 CCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAT 1566 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | || |||||||| | |||| ||| || ||||| || || Sbjct 1565 AAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 1506 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| ||| | | ||| | || || | ||||| || Sbjct 1505 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 1446 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || |||||||| ||||| |||||||| Sbjct 1445 TCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 >seq10127 Length=8452 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || |||||||| |||||||| | || ||||| || || |||||||| || Sbjct 7134 CCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 7193 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | ||||| | |||||| || || |||||| |||||||||||| || || Sbjct 7194 AGGGTGCGTCCA-TCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGG 7252 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||||| || | | || | || || | ||||| || Sbjct 7253 AATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAAC 7312 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | || | || ||||||||||| ||||| ||||| || |||||| Sbjct 7313 TTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCATA 7361 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || ||||| | || || || ||||| |||||||| || Sbjct 6905 GCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 6964 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||||| | |||||| || ||| |||||| |||||||||||| ||||| Sbjct 6965 CAAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGG 7024 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || || || || | | ||| | ||||| | || || || Sbjct 7025 AATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGAC 7084 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | || | || || |||||||| || |||||||| ||||||||| Sbjct 7085 TTCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCATA 7133 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||||||||||||| || || | |||||||| ||||| |||||||| || Sbjct 7680 CCACCACGTAAACGCAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCGAA 7739 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | ||||||||||||| ||||||||||||| || || ||||| Sbjct 7740 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAGGA 7799 Query 137305 ATGCCTTCTTTGTC 137318 || ||||| || || Sbjct 7800 ATACCTTCCTTATC 7813 >seq43370 Length=3724 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | || ||||| ||||| |||||||| ||| | Sbjct 2588 CCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 2529 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | |||||||||||| |||||| |||||| ||||| || || Sbjct 2528 AAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 2469 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| || | | ||| | ||||| | || || ||| Sbjct 2468 ATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACT 2409 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || || ||||| ||||| || ||||| Sbjct 2408 TCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10922 Length=8781 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| ||||| || | | ||||| |||| || |||||||| Sbjct 3007 CCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAG 3066 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | |||||| ||||| | |||| |||||| ||||| || || Sbjct 3067 AGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 3126 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || ||| | | ||| | ||||| | || || || Sbjct 3127 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGACC 3186 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || | ||||| || || || ||||| Sbjct 3187 TCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487981716390000